BS23040.complete Sequence
962 bp assembled on 2011-02-04
GenBank Submission: KX802914
> BS23040.complete
GAAGTTATCAGTCGACATGATTCATCCCTTCCAATTGGTATCCTCAGATG
TGGACGACTGTGATGGCTGCTGTCAGTGCGCCTGCGATTGCGACTGCAGT
CCGGAGTTGGCTCCCTGCTTCATCCAGCCGACCAAGCCGGATCCGGGTCC
GGAGGCGTACGACGAGTTCGAGGCCTGCCTCAATGGCAGCGGTCTGACCA
TACGCGTACTCAAGAACACCCACAAGGTGGAGAGCGTGATGGATGGCAGC
GAGACTGCGCCCAATCTGGGCGCAGGCGATGATCCCTGCTATCGCGATGA
CCCCAATGACTGCGAGCCCGCAAAGGAGTCCTGCCTGCACGATATGCTCC
AGCGCAGCTCCTTCGCTCGCAACCACATTAAGCGCCGGACCGGCGGCCGC
ATCATCAACCACCCGAACATCCCCAAGGTGCGAGCCAATATCAAGTACTC
TGGGAACGATGCCTGCGAGACCGACAACTACTACGTGCCATTCTCGAAGA
TCAAGGAGGCCTGCGACTTCCAGGAGGCCAAGGTCGACTGCTACCGCCAG
CGACTCTGCGGCGGATCCGATCCCATCGTGCCCGCGCACTGTCCCGTCCA
GAACCAGCGATCATGTTGCATGCAGGTCGAGCGAAAGGACATCATGGACA
CCATGAAGGGTGTCAATTTGGACACAAGGCGCAAGGGTATCGAGGTTTGC
TACAAAACCTGCGAGGAGACCGACAGCGACGTGTTCCTAGTAAAACTGGG
AAGCAAGGCCAAGTCGCAGCACAAGAAGAACACCATCGAGATCGAGCTGC
GGACGCCCAAGCAGCCCGTAACCCTTCCGATCAGCAAGGTGACCACGGAG
ACCTATGTTTCCGAGGAGATGCTAACCGGTGGCAAGAAGGGGAAGAAGGG
CAAGAAGGGCAAGGGCAAGAAGGGCAAGGGCAAGAAGAAGAAGTAGAAGC
TTTCTAGACCAT
BS23040.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:11:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9133-RD | 930 | CG9133-PD | 1..930 | 17..946 | 4560 | 99.4 | Plus |
| CG9133-RB | 999 | CG9133-PB | 101..999 | 48..946 | 4405 | 99.3 | Plus |
| CG9133-RC | 999 | CG9133-PC | 101..999 | 48..946 | 4405 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9133-RD | 3109 | CG9133-RD | 1933..2863 | 17..947 | 4565 | 99.4 | Plus |
| CG9130-RB | 3109 | CG9130-RB | 1933..2863 | 17..947 | 4565 | 99.4 | Plus |
| CG9133-RB | 1536 | CG9133-RB | 391..1290 | 48..947 | 4410 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:11:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1254367..1255046 | 17..696 | 3355 | 99.6 | Plus |
| 3L | 28110227 | 3L | 1255486..1255740 | 693..947 | 1230 | 98.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:11:37 has no hits.
BS23040.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:32:43 Download gff for
BS23040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9133-RD | 1933..2862 | 17..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:38 Download gff for
BS23040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9130-RB | 1933..2862 | 17..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:20:25 Download gff for
BS23040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9130-RB | 1933..2862 | 17..946 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:20:25 Download gff for
BS23040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1254367..1255044 | 17..694 | 99 | -> | Plus |
| 3L | 1255488..1255739 | 695..946 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:38 Download gff for
BS23040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1254367..1255044 | 17..694 | 99 | -> | Plus |
| arm_3L | 1255488..1255739 | 695..946 | 98 | | Plus |
BS23040.pep Sequence
Translation from 16 to 945
> BS23040.pep
MIHPFQLVSSDVDDCDGCCQCACDCDCSPELAPCFIQPTKPDPGPEAYDE
FEACLNGSGLTIRVLKNTHKVESVMDGSETAPNLGAGDDPCYRDDPNDCE
PAKESCLHDMLQRSSFARNHIKRRTGGRIINHPNIPKVRANIKYSGNDAC
ETDNYYVPFSKIKEACDFQEAKVDCYRQRLCGGSDPIVPAHCPVQNQRSC
CMQVERKDIMDTMKGVNLDTRRKGIEVCYKTCEETDSDVFLVKLGSKAKS
QHKKNTIEIELRTPKQPVTLPISKVTTETYVSEEMLTGGKKGKKGKKGKG
KKGKGKKKK*
BS23040.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:07:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9133-PD | 309 | CG9133-PD | 1..309 | 1..309 | 1694 | 100 | Plus |
| CG9133-PB | 332 | CG9133-PB | 31..332 | 8..309 | 1640 | 98.7 | Plus |
| CG9133-PC | 332 | CG9133-PC | 31..332 | 8..309 | 1640 | 98.7 | Plus |
