BS23051.complete Sequence
1640 bp assembled on 2011-02-02
GenBank Submission: KX805214
> BS23051.complete
GAAGTTATCAGTCGACATGCTTCGTTATACGGCACGGATTTTGAATGGGA
TTTACCCACTTATGCCAAGGCAAGTATTAAAACGTTCCGCACACCAGGTG
CCCGAGAAGCTGAAAAAAGTTGAGACGGACAAGGACCCGGAATTCTCGGA
AATGGTTCTTTATTATTATCACAAGGCCGCGCAGACTATGGAGCCTGCAT
TGCTCAAGGAAATGGAAAAGTATCCGCATATGAAGCCGGAGGAGCGTCAG
GCTCGTGTCACCGCTATACTGAATCTGCTTGGGAGCGTCTCCACCTCGGT
GGAGGTTAATTTTCCCATTGTCCGCAAAAACGGCACCTACGAGATCATCA
GCGGTTATCGTTCGCATCATGTACGCCATCGATTGCCTCTCAAGGGCGGA
ATCCGATACGCTCTGGACGTGAACGAGAGCGAAGTTAAAGCCCTTGCCGC
CATTATGACGTTCAAGTGCGCTTGCGTGAATGTACCTTATGGTGGATCTA
AGGGCGGCATTTGTATCGATCCCAAGAAGTATACAGTGGATGAGCTGCAG
ACGATCACACGGCGATACACGATGGAGTTGCTCAAGCGTAATATGATTGG
TCCCGGCATCGATGTACCGGCGCCCGATGTGAACACTGGTCCGCGTGAGA
TGAGCTGGATTGTTGATCAGTACCAGAAGACATTTGGCTACAAGGATATC
AATTCATCGGCTATTGTCACCGGGAAGCCCGTACACAACGGCGGCATTAA
TGGTCGACATTCGGCCACGGGCAGAGGCGTTTGGAAGGCGGGCGATCTCT
TTCTGAAGGATAAGGAATGGATGGATCTGCTCAAGTGGAAGACGGGATGG
AAGGACAAGACGGTCATAGTGCAGGGATTTGGCAATGTGGGCTCCTTTGC
CGCTAAGTATGTGCACGAGGCGGGCGCCAAAGTCATCGGAATAAAAGAGT
TTGATGTTTCTCTGGTTAATAAGGACGGCATAGATATTAATGATCTTTTT
GAATACACTGAGGAAAAGAAGACTATTAAAGGATATCCAAAAGCTCAGGA
GTCTAAGGAGGACTTGTTGGTAGCCGAAACCGATATCCTTATGCCGTGTG
CCACCCAAAAAGTGATAACCACCGACAATGCCAAAGACATCAAGGCCAAG
CTGATCCTGGAAGGCGCCAACGGGCCGACCACACCATCTGGCGAGAAAAT
CCTATTGGATAAGGGTGTCCTCCTAGTTCCCGATCTCTATTGCAATGCGG
GCGGCGTAACAGTATCCTACTTTGAGTACCTCAAAAACATTAACCACGTG
TCATATGGCAAAATGAACTCTAAATCTACATCCGAGCTTATTATCGAACT
GATGAACTCCATCAATGAGTCTTTGCATGAATGCCCCGATAGTCAACTAC
CGAACATATGTCCCAATAAGAAACTTAAGAGGATACAACAATGCACCACA
GAGGCGGATATCGTGGACTCGGCTCTCCAAACAGTTATGGAATCTGCAGC
ACGTGGCATCAAGGAGATGGCCCACAAATTTGAATTGTGTAACGATCTGC
GGAGGGCCGCCTACGTTTGGTCTTCATTCAAAATTTTCCAAGCCATGGAA
AGCTCCGGAATTTCCCAACAGTAGAAGCTTTCTAGACCAT
BS23051.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:04:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4434-RA | 1608 | CG4434-PA | 1..1608 | 17..1624 | 8040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:04:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4434-RA | 1795 | CG4434-RA | 92..1699 | 17..1624 | 8040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:04:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23289066..23289660 | 992..398 | 2975 | 100 | Minus |
| 3R | 32079331 | 3R | 23288599..23289006 | 1399..992 | 2040 | 100 | Minus |
| 3R | 32079331 | 3R | 23289716..23290098 | 399..17 | 1915 | 100 | Minus |
| 3R | 32079331 | 3R | 23288313..23288537 | 1624..1400 | 1125 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:04:06 has no hits.
BS23051.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-02 09:57:10 Download gff for
BS23051.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4434-RA | 92..1699 | 17..1624 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:45:39 Download gff for
BS23051.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4434-RA | 92..1699 | 17..1624 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:50:17 Download gff for
BS23051.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4434-RA | 92..1699 | 17..1624 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:50:17 Download gff for
BS23051.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23288313..23288537 | 1400..1624 | 100 | <- | Minus |
| 3R | 23288599..23289006 | 992..1399 | 100 | <- | Minus |
| 3R | 23289067..23289659 | 399..991 | 100 | <- | Minus |
| 3R | 23289717..23290098 | 17..398 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:45:39 Download gff for
BS23051.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19114321..19114728 | 992..1399 | 100 | <- | Minus |
| arm_3R | 19114035..19114259 | 1400..1624 | 100 | <- | Minus |
| arm_3R | 19114789..19115381 | 399..991 | 100 | <- | Minus |
| arm_3R | 19115439..19115820 | 17..398 | 100 | | Minus |
BS23051.pep Sequence
Translation from 16 to 1623
> BS23051.pep
MLRYTARILNGIYPLMPRQVLKRSAHQVPEKLKKVETDKDPEFSEMVLYY
YHKAAQTMEPALLKEMEKYPHMKPEERQARVTAILNLLGSVSTSVEVNFP
IVRKNGTYEIISGYRSHHVRHRLPLKGGIRYALDVNESEVKALAAIMTFK
CACVNVPYGGSKGGICIDPKKYTVDELQTITRRYTMELLKRNMIGPGIDV
PAPDVNTGPREMSWIVDQYQKTFGYKDINSSAIVTGKPVHNGGINGRHSA
TGRGVWKAGDLFLKDKEWMDLLKWKTGWKDKTVIVQGFGNVGSFAAKYVH
EAGAKVIGIKEFDVSLVNKDGIDINDLFEYTEEKKTIKGYPKAQESKEDL
LVAETDILMPCATQKVITTDNAKDIKAKLILEGANGPTTPSGEKILLDKG
VLLVPDLYCNAGGVTVSYFEYLKNINHVSYGKMNSKSTSELIIELMNSIN
ESLHECPDSQLPNICPNKKLKRIQQCTTEADIVDSALQTVMESAARGIKE
MAHKFELCNDLRRAAYVWSSFKIFQAMESSGISQQ*
BS23051.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:01:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4434-PA | 535 | CG4434-PA | 1..535 | 1..535 | 2792 | 100 | Plus |
| Gdh-PF | 549 | CG5320-PF | 40..548 | 26..533 | 1238 | 48.2 | Plus |
| Gdh-PA | 562 | CG5320-PA | 40..561 | 26..533 | 1222 | 46.7 | Plus |
| Gdh-PD | 391 | CG5320-PD | 1..390 | 147..533 | 963 | 49.9 | Plus |
| Gdh-PB | 404 | CG5320-PB | 1..403 | 147..533 | 947 | 47.8 | Plus |
