Clone BS23056 Report

Search the DGRC for BS23056

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:230
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptCG15035-RA
Protein status:BS23056.pep: full length peptide match
Sequenced Size:1157

Clone Sequence Records

BS23056.complete Sequence

1157 bp assembled on 2011-02-02

GenBank Submission: KX802658

> BS23056.complete
GAAGTTATCAGTCGACATGGATGTCGAAACAAGTCTGGATATCGAAGAAA
TGCGCCGAAGGATTCAGCAAGGCATCAACAGATGCTGTGAACAACTGCTT
GAAATAGCCATGATTTTAACCCATAAAGGTGGTCAGGTTTTAAACCGTTT
GAAGGGAGCATCATTCCCGGAGCTCGCCCAAAATAGTGAAAATATCGGTA
ATGGTTCAATGTCCGAAAATCAGAATCAAAGGCTCGATCCCATGACAAGT
GCACAATATACTACTTTAGGATTTGGAAACTTTGATGGCGAGGGGGACTA
CTTGCGGCAGAAGAATAAAATCAACATTCAACTTCCGCGTCTTGTGAGCG
TGACTTGCGGCTTTGCCAAGGATCACATAAGATATCCGGAATATAATCGT
GGAAAGTTTGGTGAGGATGCCTGGTTCATGTCCTCCAGTCCACAGGCGTG
CATAATGGGCGTGGCCGATGGAGTGGGCGGTTGGCGAAATTATGGCGTTG
ATCCCGGAAAATTCAGTATGACCCTAATGCGATCCTGTGAACGAATGTCA
CATGCACCCGATTTTAAGCCGAACAGACCGGAAATACTACTGGAACGAGC
CTATTTTGATCTCCTAGACCAAAAGTGTCCCATTGTTGGCAGCTGTACGG
CGTGTATTTTAGCTCTTAAACGAGATGATAGCACCTTATATGCAGCAAAT
ATCGGAGACAGTGGTTTTTTGGTGGTGCGATCTGGTAAAGTGGTTTGCCG
GTCCCAGGAGCAGCAGCATCAATTTAACACGCCCTATCAATTGGCATCGC
CGCCTCCGGGTTATGACTTCGATGCAGTATCGGATGGGCCCGAATCAGCG
GATACCATTCAATTCCCGATGCAACTGGGCGACGTCATTCTGCTGGCCAC
CGATGGGGTCTACGATAATGTACCTGAAAGCTTTCTCGTGGAGGTCCTTA
CGGAAATGTCTGGCATATCGAATCCCGTACGGCTTCAAATGGCCGCCAAT
ACGGTGGCTTTAATGGCCCGCACGTTGAGCTTCAGTCCGAAACACGATTC
TCCATTTAGTCAGAATGCCCGGAAACACGACATCGATGCATGGGGTGGAA
AACCGGATGACATTACGGTCCTATTGGCCAGTGTCGTCTAGAAGCTTTCT
AGACCAT

BS23056.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG15035-RA 1125 CG15035-PA 1..1125 17..1141 5625 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:04:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG15035-RA 1477 CG15035-RA 76..1202 17..1143 5635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:04:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7401973..7403099 1143..17 5635 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:04:33 has no hits.

BS23056.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-02 09:57:11 Download gff for BS23056.complete
Subject Subject Range Query Range Percent Splice Strand
CG15035-RA 76..1200 17..1141 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:45:51 Download gff for BS23056.complete
Subject Subject Range Query Range Percent Splice Strand
CG15035-RA 76..1200 17..1141 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:50:27 Download gff for BS23056.complete
Subject Subject Range Query Range Percent Splice Strand
CG15035-RA 76..1200 17..1141 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:50:27 Download gff for BS23056.complete
Subject Subject Range Query Range Percent Splice Strand
X 7401975..7403099 17..1141 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:45:51 Download gff for BS23056.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7296008..7297132 17..1141 100   Minus

BS23056.pep Sequence

Translation from 16 to 1140

> BS23056.pep
MDVETSLDIEEMRRRIQQGINRCCEQLLEIAMILTHKGGQVLNRLKGASF
PELAQNSENIGNGSMSENQNQRLDPMTSAQYTTLGFGNFDGEGDYLRQKN
KINIQLPRLVSVTCGFAKDHIRYPEYNRGKFGEDAWFMSSSPQACIMGVA
DGVGGWRNYGVDPGKFSMTLMRSCERMSHAPDFKPNRPEILLERAYFDLL
DQKCPIVGSCTACILALKRDDSTLYAANIGDSGFLVVRSGKVVCRSQEQQ
HQFNTPYQLASPPPGYDFDAVSDGPESADTIQFPMQLGDVILLATDGVYD
NVPESFLVEVLTEMSGISNPVRLQMAANTVALMARTLSFSPKHDSPFSQN
ARKHDIDAWGGKPDDITVLLASVV*

BS23056.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:01:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG15035-PA 374 CG15035-PA 1..374 1..374 1968 100 Plus
CG12091-PB 321 CG12091-PB 54..319 107..373 860 59.9 Plus
CG12091-PA 321 CG12091-PA 54..319 107..373 860 59.9 Plus
fig-PA 314 CG7615-PA 43..309 107..373 583 46.5 Plus