Clone BS23058 Report

Search the DGRC for BS23058

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:230
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptRpn12R-RA
Protein status:BS23058.pep: full length peptide match
Sequenced Size:821

Clone Sequence Records

BS23058.complete Sequence

821 bp assembled on 2011-02-02

GenBank Submission: KX805457

> BS23058.complete
GAAGTTATCAGTCGACATGTCGAATCTGTACACCGAATTGAAGAACGAGT
GGAGCAAACATGCGCCCAACCTCACCCACTGCTCCCGCCTCCTGGATGGC
TTCAAACTGGAGCTGGTGAGGTCCAACTTTGGAACAATCCAAACTGCATC
GAGTTCCAAGCAAAAGGATCAGCTAATCAAATCGCGGGAGATGCTGGAAA
TCGCCGTGGAACATAGCATCACCATCAAGGATTATGCTGCCTTCGAGAGA
TATATGGCCCAGTTGAATACCTACTACTATGATTACGATAAGTACTTGGA
ATCATCGAAGCACATGTACAAGTTCATGGGCCTAAATCTGCTATATATGT
TGGCCACGAATCGCCTTGCCGACTTCCACATCGAACTGGAACGTTTACCG
ACGGCTTTGCTGCTCCATGATAGCTTCATCCAACCCGTTTTGGCTTTGGA
GAACTACTACATGGAGGGCAGATACAACAAGATACTGCAAGCCAAGAAAT
CTATGCCCTCGGAGATCTATTCGAATTTTATGGACATCCTGGTGAACACG
GCGCGTGAGGAGATCGCATCCTGCATGGAGAAATCCTATCTGAAGATGGC
GCCCAAACTAGCTGCTCAGCGTTTGGGCCTTCGTCCCGGTTCCAAGGAGC
TTTTCGAGCTGGCGACTAAGCGCCAGTGGTGTCTGGACGAGGAGGGGAAC
TACGACTATGCTGGACTTCATACCAGACCCATGGAGAAGGTCCCTGCCAA
GGACATCGCCACGCATAATCTCACTTATGCCCAAGAGCTGGAGAAAATAG
TTTGAAAGCTTTCTAGACCAT

BS23058.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:02:30
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn12R-RA 789 CG11552-PA 1..789 17..805 3765 98.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:02:31
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn12R-RA 940 CG11552-RA 66..856 16..806 3775 98.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15041715..15042505 806..16 3775 98.5 Minus
Blast to na_te.dros performed on 2014-11-26 22:02:30 has no hits.

BS23058.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-02 09:57:06 Download gff for BS23058.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn12R-RA 67..854 17..804 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:44:43 Download gff for BS23058.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn12R-RA 67..854 17..804 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:49:29 Download gff for BS23058.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn12R-RA 67..854 17..804 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:49:29 Download gff for BS23058.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15041717..15042504 17..804 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:44:43 Download gff for BS23058.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15034817..15035604 17..804 98   Minus

BS23058.pep Sequence

Translation from 16 to 804

> BS23058.pep
MSNLYTELKNEWSKHAPNLTHCSRLLDGFKLELVRSNFGTIQTASSSKQK
DQLIKSREMLEIAVEHSITIKDYAAFERYMAQLNTYYYDYDKYLESSKHM
YKFMGLNLLYMLATNRLADFHIELERLPTALLLHDSFIQPVLALENYYME
GRYNKILQAKKSMPSEIYSNFMDILVNTAREEIASCMEKSYLKMAPKLAA
QRLGLRPGSKELFELATKRQWCLDEEGNYDYAGLHTRPMEKVPAKDIATH
NLTYAQELEKIV*

BS23058.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:00:54
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn12R-PA 262 CG11552-PA 1..262 1..262 1357 100 Plus
Rpn12-PA 264 CG4157-PA 4..264 1..262 660 49.6 Plus