BS23077.complete Sequence
1128 bp assembled on 2011-02-02
GenBank Submission: KX806146
> BS23077.complete
GAAGTTATCAGTCGACATGGGAATCCTGCAGGCGAGGAGGCATCACTGCG
TCGACAAGGTGGTGAGTGACCTGTGCCTGGGACACTACGAGCACGCTCTG
AGGCAGATCAACGAGGATCTGGAAGGTTTACAGAACCACGATGAGATCAT
GGCGCTGCTGGAGCTAAAGAATATCATTTTGAGACTGAGGTTGAAGGGCG
AGGCCCAGCGGACCATAGGCCCAACTCGCAAATCTGACGCCCTGCCCCAC
AAGTTCACACTCGAGATGCTGGACGTGGTGCAGAAGGTCCTGCGGTGCCG
CAATCACTACGAGGTGCTGCGCATCTCTCATCATGCCACCTACTCCGAGG
TGAAGCGGGCCTACCACAAGCTGGCCCTGCGCCTCCATCCGGACAAGAAC
AAATCTCCTGGGGCTGAGCAGGCCTTCCGGCGGATCAGCGAGGCGGCTGA
CTGCCTCACGGACTGCCAGAAAAGGATTGAGTACAACATAGCAACGGCAG
TGGGCGACTGCCACGACCAGGATCCCTCGCAGTACAAGGATTATCGCGGG
GAAAGTGAATTCAATGAGGCAAATGGGAACGATCTGGGAGCCGCTTTCAG
AAGGCCTTATCGGGGGGCCAATCAGCGGATGCCCCAGAGGCAGTCACTCT
ACCAAACACAGCAACTCGTCATCGGAGTGGTGGCTGCTCTGGTTTTTCTC
TTCGTCACCATGCACTTCATCGCAGGCGCTCCTGCTTACAGTTTTACGCT
AACCAGAACCCATAGCGCTCGTCGGCTCAGTCGGACGAACCACATTGCCT
ACTACATGAATCCGACGACTCTGTCCAAGTACACAGAACAGCAGTTGGCC
GAACTGGAAGTAGAAATCGAGGAGGTTTACATCTCGGACCTCAAACATAA
GTGCAGGCAAGAGCGGAGTTGGAGGGATAATCTGTTTCTCAGGGCGAGGC
AGGGAAACAACGACCAGAAGTTGCTCCAGCATGTCAGCCAGATGTCCACT
CCCGCTTGCCAGGCGTTGCTCCAGCTGGGAAAGTCTGGTCACAGTCGACT
GTTGCTCGAGAACGAGTCTTTGAATCAGGACGTGCCAGTCTGAAAGCTTT
CTAGACCATTCGTTTGGCGCTTTAAAGG
BS23077.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:04:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30156-RB | 1077 | CG30156-PB | 1..1077 | 17..1093 | 5325 | 99.6 | Plus |
| CG30156-RA | 1077 | CG30156-PA | 1..1077 | 17..1093 | 5325 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:04:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30156-RB | 1489 | CG30156-RB | 343..1419 | 17..1093 | 5325 | 99.6 | Plus |
| CG30156-RA | 1425 | CG30156-RA | 279..1355 | 17..1093 | 5325 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:04:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6981969..6982708 | 756..17 | 3670 | 99.7 | Minus |
| 2R | 25286936 | 2R | 6981516..6981685 | 1093..924 | 850 | 100 | Minus |
| 2R | 25286936 | 2R | 6981742..6981913 | 924..753 | 830 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:04:50 has no hits.
BS23077.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-02 09:57:12 Download gff for
BS23077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30156-RA | 279..1364 | 17..1103 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:45:59 Download gff for
BS23077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30156-RA | 279..1364 | 17..1103 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:50:36 Download gff for
BS23077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30156-RA | 279..1364 | 17..1103 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:50:36 Download gff for
BS23077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6981507..6981685 | 924..1103 | 97 | <- | Minus |
| 2R | 6981743..6981909 | 757..923 | 98 | <- | Minus |
| 2R | 6981969..6982708 | 17..756 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:45:59 Download gff for
BS23077.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2869012..2869190 | 924..1103 | 97 | <- | Minus |
| arm_2R | 2869248..2869414 | 757..923 | 98 | <- | Minus |
| arm_2R | 2869474..2870213 | 17..756 | 99 | | Minus |
BS23077.pep Sequence
Translation from 16 to 1092
> BS23077.pep
MGILQARRHHCVDKVVSDLCLGHYEHALRQINEDLEGLQNHDEIMALLEL
KNIILRLRLKGEAQRTIGPTRKSDALPHKFTLEMLDVVQKVLRCRNHYEV
LRISHHATYSEVKRAYHKLALRLHPDKNKSPGAEQAFRRISEAADCLTDC
QKRIEYNIATAVGDCHDQDPSQYKDYRGESEFNEANGNDLGAAFRRPYRG
ANQRMPQRQSLYQTQQLVIGVVAALVFLFVTMHFIAGAPAYSFTLTRTHS
ARRLSRTNHIAYYMNPTTLSKYTEQQLAELEVEIEEVYISDLKHKCRQER
SWRDNLFLRARQGNNDQKLLQHVSQMSTPACQALLQLGKSGHSRLLLENE
SLNQDVPV*
BS23077.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:01:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30156-PB | 358 | CG30156-PB | 1..358 | 1..358 | 1866 | 100 | Plus |
| CG30156-PA | 358 | CG30156-PA | 1..358 | 1..358 | 1866 | 100 | Plus |
| CG3061-PA | 370 | CG3061-PA | 11..364 | 11..334 | 364 | 29.2 | Plus |
| CG2887-PA | 342 | CG2887-PA | 3..65 | 95..157 | 163 | 46 | Plus |
| DnaJ-1-PA | 334 | CG10578-PA | 3..61 | 95..153 | 158 | 49.2 | Plus |
