BS23096.complete Sequence
1652 bp assembled on 2011-02-16
GenBank Submission: KX803019
> BS23096.complete
GAAGTTATCAGTCGACATGCGGAAGCTTTGTTCGAGTGAGTCAGTTTGTT
CTGGAATTGAGGTTGAAATTGAAAATAATAACAATAATCATATTCATCAT
GGCGAGACAACGTATCACATGAAAATACTGGTGCCCGCGGTGGCCTCCGG
GGCCATCATTGGCAAAGGTGGCGAGACGATCGCCTCCCTGCAGAAGGACA
CGGGTGCTAGGGTCAAGATGTCCAAGTCGCACGACTTCTACCCAGGCACC
ACCGAACGCGTGTGCCTGATCACCGGCTCCACGGAGGCTATCATGGTCGT
GATGGAGTTCATCATGGACAAGATCCGCGAGAAGCCCGACCTGACCAACA
AGATCGTCGATACCGACTCAAAACAGACACAGGAGCGCGACAAGCAGGTC
AAGATCCTGGTGCCCAACTCGACCGCCGGCATGATCATTGGCAAGGGCGG
TGCCTTCATTAAACAGATCAAGGAGGAGAGCGGCTCCTATGTCCAGATCT
CGCAGAAGCCCACGGATGTGTCGTTGCAGGAGCGCTGCATCACCATCATA
GGCGACAAGGAGAACAATAAGAACGCCTGCAAGATGATCCTCTCGAAGAT
CGTCGAAGATCCCCAGTCGGGCACCTGCCTGAACGTATCCTACGCGGACG
TCAGCGGCCCGGTGGCCAACTTTAATCCGACCGGCTCCCCGTACGCCACC
AATCAGAATGCCATCAACTCGAGCACCGCTTCGTTGAACTCCACGTTGGG
CACCACGATCGGCGGTGCAAACTCGGCGGCCAGCCTGCTAGTCAACGGCA
CCGGCATCAATTTGTCCATCAATCTGGGCTCACCCAATCCGGCGCCCAAT
CTAGCGGTTGCCACACAGCTGCTCGAGCATATTAAGGTTGCCATGCGCGG
CTCTGGCTATTCGGAGACCGTAACGAACGAAGTTGTCGCCGCTCTGAGCG
TGCTGGCCAAGTACGGCGTCCTTGGAATGGGCGTGGGTGTGTCGCACACC
AACGGCGCCCACTCAACGCTGGGCAACTTCCTGGGCGTAACGACGCTGGA
CCAGCAGACAGCCGCTGCCGCATCTGCGGCCACCGCCAGCAATGTGTTCG
GTGCCGTTGGCCAGGTAAATCTGGAGCAATATGCCGCAGCGGTGGCCTCT
GCAGCTGCCGCCAGCCGGCCGACGCAGTCGCAACTGGACGCTGCCGCAGT
GCAATTCGATCCATTCCGCCATTTGGGCTCGGCAACGGCGCCGGCCGCCA
CGCCCGTCTCACTGAACAACAATAGCTTTGGATTGACGGCGACCACGGGA
ACGGCGACCACGGCGCAGCTGGGCGGTCTAAGCAAGAGTCCCACTCCCGG
TGACCTTAGCTCCAAGGACTCGAAAAACGTCGAGGTGCCGGAAGTGATTA
TCGGCGCTATCCTAGGTCCGAGCGGTCGTAGTTTAGTTGAAATTCAACAT
GTTTCTGGCGCAAATGTGCAAATTTCCAAAAAGGGCATATTCGCACCTGG
CACTAGAAATCGCATTGTAACCATAACTGGTCAGCCGAGTGCCATTGCCA
AAGCGCAATATCTAATTGAACAGAAAATCAACGAGGAGGAGACAAAGAGG
GCGCGACAAATTCCATTAACCACTGTTGTGAATTAAAAGCTTTCTAGACC
AT
BS23096.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:20:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ps-RJ | 1620 | CG42670-PJ | 1..1620 | 17..1636 | 8100 | 100 | Plus |
| ps-RR | 2343 | CG42670-PR | 743..2343 | 36..1636 | 8005 | 100 | Plus |
| ps-RT | 1851 | CG42670-PT | 251..1851 | 36..1636 | 8005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:20:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ps-RJ | 2558 | CG8144-RJ | 139..1760 | 17..1638 | 8110 | 100 | Plus |
| ps-RR | 3624 | CG42670-RR | 1224..2826 | 36..1638 | 8015 | 100 | Plus |
| ps-RT | 2889 | CG42670-RT | 489..2091 | 36..1638 | 8015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:20:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9445252..9445898 | 243..889 | 3235 | 100 | Plus |
| 3R | 32079331 | 3R | 9445967..9446499 | 885..1417 | 2665 | 100 | Plus |
| 3R | 32079331 | 3R | 9447627..9447851 | 1414..1638 | 1125 | 100 | Plus |
| 3R | 32079331 | 3R | 9445043..9445188 | 101..246 | 730 | 100 | Plus |
| 3R | 32079331 | 3R | 9444011..9444077 | 36..102 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:20:19 has no hits.
BS23096.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:18:18 Download gff for
BS23096.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ps-RJ | 139..1756 | 17..1634 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:12:24 Download gff for
BS23096.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ps-RJ | 139..1756 | 17..1634 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:33 Download gff for
BS23096.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ps-RJ | 139..1756 | 17..1634 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:33 Download gff for
BS23096.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9434404..9434422 | 17..35 | 100 | -> | Plus |
| 3R | 9444011..9444076 | 36..101 | 100 | -> | Plus |
| 3R | 9445044..9445187 | 102..245 | 100 | -> | Plus |
| 3R | 9445255..9445895 | 246..886 | 100 | -> | Plus |
| 3R | 9445969..9446497 | 887..1415 | 100 | -> | Plus |
| 3R | 9447629..9447847 | 1416..1634 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:12:24 Download gff for
BS23096.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5260126..5260144 | 17..35 | 100 | -> | Plus |
| arm_3R | 5269733..5269798 | 36..101 | 100 | -> | Plus |
| arm_3R | 5270766..5270909 | 102..245 | 100 | -> | Plus |
| arm_3R | 5270977..5271617 | 246..886 | 100 | -> | Plus |
| arm_3R | 5271691..5272219 | 887..1415 | 100 | -> | Plus |
| arm_3R | 5273351..5273569 | 1416..1634 | 100 | | Plus |
BS23096.pep Sequence
Translation from 16 to 1635
> BS23096.pep
MRKLCSSESVCSGIEVEIENNNNNHIHHGETTYHMKILVPAVASGAIIGK
GGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEAIMVVMEFIM
DKIREKPDLTNKIVDTDSKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQ
IKEESGSYVQISQKPTDVSLQERCITIIGDKENNKNACKMILSKIVEDPQ
SGTCLNVSYADVSGPVANFNPTGSPYATNQNAINSSTASLNSTLGTTIGG
ANSAASLLVNGTGINLSINLGSPNPAPNLAVATQLLEHIKVAMRGSGYSE
TVTNEVVAALSVLAKYGVLGMGVGVSHTNGAHSTLGNFLGVTTLDQQTAA
AASAATASNVFGAVGQVNLEQYAAAVASAAAASRPTQSQLDAAAVQFDPF
RHLGSATAPAATPVSLNNNSFGLTATTGTATTAQLGGLSKSPTPGDLSSK
DSKNVEVPEVIIGAILGPSGRSLVEIQHVSGANVQISKKGIFAPGTRNRI
VTITGQPSAIAKAQYLIEQKINEEETKRARQIPLTTVVN*
BS23096.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:13:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ps-PJ | 539 | CG16765-PJ | 1..539 | 1..539 | 2695 | 100 | Plus |
| ps-PR | 780 | CG42670-PR | 246..780 | 5..539 | 2666 | 99.6 | Plus |
| ps-PT | 616 | CG42670-PT | 82..616 | 5..539 | 2666 | 99.6 | Plus |
| ps-PO | 572 | CG16765-PO | 39..572 | 6..539 | 2663 | 99.8 | Plus |
| ps-PN | 572 | CG16765-PN | 39..572 | 6..539 | 2663 | 99.8 | Plus |
