BS23102.complete Sequence
716 bp assembled on 2011-01-25
GenBank Submission: KX804673
> BS23102.complete
GAAGTTATCAGTCGACATGGTCTCTTTTTGTGCAACTCTGATTCGACAGT
TTCGGCACAGGTCGGCAGCGGCATTTCAGATTGCGGAGTCCGCCATTTTA
GCTAACAAATCTATAACCCTAGCTTCGTCAGCGTGCAGTGTGAATAGGGG
TCAGTTGCAGTTTGGAATTCAGATTGTTCGCGAATATTCGAAAGCGTCAA
AGATGAGTACTTTGCCTAGGGTGTTTTTTGATATGACCGCCGACAACGAG
CCCCTCGGTCGGATCGTCATGGAGCTGCGCTCCGATGTCGTGCCCAAGAC
CGCCGAGAACTTCCGCGCCTTGTGCACCGGCGAGAAGGGATTCGGGTACA
AGGGCTCCATTTTCCACCGCGTCATCCCCAACTTCATGTGCCAGGGCGGC
GACTTCACCAACCACAACGGCACTGGCGGCAAGTCCATCTACGGCAACAA
GTTCCCCGATGAGAACTTCGAGCTGAAGCACACCGGCTCCGGCATCCTGT
CGATGGCCAACGCTGGCGCCAACACGAACGGCTCCCAGTTCTTTATTTGC
ACTGTGAAGACCGCCTGGTTGGACAACAAGCACGTCGTCTTCGGCGAGGT
CGTCGAGGGACTGGATGTGGTCAAGAAGATCGAATCTTATGGATCGCAGT
CTGGCAAGACCTCCAAGAAGATCATTGTGGCTAACTCTGGTTCTCTTTAA
AAGCTTTCTAGACCAT
BS23102.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:25:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp1-RA | 684 | CG9916-PA | 1..684 | 17..700 | 3420 | 100 | Plus |
| CG7768-RB | 495 | CG7768-PB | 64..464 | 269..669 | 745 | 79.1 | Plus |
| CG7768-RA | 495 | CG7768-PA | 64..464 | 269..669 | 745 | 79.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:25:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp1-RA | 1227 | CG9916-RA | 35..718 | 17..700 | 3420 | 100 | Plus |
| CG7768-RB | 679 | CG7768-RB | 151..551 | 269..669 | 745 | 79.1 | Plus |
| CG7768-RA | 717 | CG7768-RA | 189..589 | 269..669 | 745 | 79.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:25:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16318182..16318609 | 700..273 | 2140 | 100 | Minus |
| X | 23542271 | X | 16320079..16320336 | 274..17 | 1290 | 100 | Minus |
| 3L | 28110227 | 3L | 14218446..14218846 | 269..669 | 745 | 79.1 | Plus |
| 2R | 25286936 | 2R | 17545994..17546154 | 386..546 | 370 | 82 | Plus |
| 2R | 25286936 | 2R | 22645337..22645533 | 543..347 | 280 | 76.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:25:57 has no hits.
BS23102.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:02 Download gff for
BS23102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp1-RA | 77..758 | 17..698 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:56:33 Download gff for
BS23102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp1-RA | 35..716 | 17..698 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:04:09 Download gff for
BS23102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp1-RA | 35..716 | 17..698 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:04:09 Download gff for
BS23102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16318184..16318607 | 275..698 | 100 | <- | Minus |
| X | 16320079..16320336 | 17..274 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:56:33 Download gff for
BS23102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16212217..16212640 | 275..698 | 100 | <- | Minus |
| arm_X | 16214112..16214369 | 17..274 | 100 | | Minus |
BS23102.pep Sequence
Translation from 16 to 699
> BS23102.pep
MVSFCATLIRQFRHRSAAAFQIAESAILANKSITLASSACSVNRGQLQFG
IQIVREYSKASKMSTLPRVFFDMTADNEPLGRIVMELRSDVVPKTAENFR
ALCTGEKGFGYKGSIFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFPDEN
FELKHTGSGILSMANAGANTNGSQFFICTVKTAWLDNKHVVFGEVVEGLD
VVKKIESYGSQSGKTSKKIIVANSGSL*
BS23102.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:12:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp1-PA | 227 | CG9916-PA | 1..227 | 1..227 | 1169 | 100 | Plus |
| CG7768-PB | 164 | CG7768-PB | 2..164 | 65..227 | 752 | 83.4 | Plus |
| CG7768-PA | 164 | CG7768-PA | 2..164 | 65..227 | 752 | 83.4 | Plus |
| cyp33-PA | 300 | CG4886-PA | 133..299 | 59..227 | 611 | 68.6 | Plus |
| CG2852-PD | 205 | CG2852-PD | 17..190 | 53..227 | 490 | 54 | Plus |
