BS23105.complete Sequence
752 bp assembled on 2011-01-25
GenBank Submission: KX802402
> BS23105.complete
GAAGTTATCAGTCGACATGACTCTGCAATGTAATAATAATAATAATTTCG
CTTGCTTTTTAGGTCCCAACATGACTGCAGCGCCATACAACTACAACTAT
ATCTTTAAATACATCATCATTGGTGACATGGGCGTGGGCAAGTCCTGCCT
GCTCCACCAGTTCACCGAGAAGAAATTCATGGCCAATTGTCCTCACACCA
TTGGCGTGGAGTTCGGCACACGCATCATTGAGGTGGACGACAAAAAGATC
AAGCTACAGATCTGGGACACAGCGGGTCAGGAGCGATTCAGGGCAGTGAC
ACGCTCCTATTACCGTGGAGCAGCTGGTGCGCTGATGGTCTACGATATTA
CCAGGCGCTCCACGTACAATCACCTGAGCAGCTGGCTTACCGACACTCGC
AATCTCACCAATCCCAGCACTGTGATCTTTCTCATTGGCAACAAATCGGA
TCTGGAGAGCACTCGGGAGGTTACCTACGAGGAGGCCAAGGAGTTTGCCG
ACGAGAACGGCCTAATGTTTCTCGAAGCGAGCGCTATGACTGGCCAGAAT
GTGGAGGAGGCTTTTCTGGAGACCGCACGCAAGATTTACCAGAACATCCA
GGAGGGTCGGCTCGATCTGAACGCCTCCGAGTCCGGAGTTCAGCACAGGC
CATCGCAGCCGTCGCGAACTTCGCTGAGTAGCGAGGCTACGGGCGCCAAG
GATCAGTGCTCGTGCTAAAAGCTTTCTAGACCATTCGTTTGGCCCTCAAA
CG
BS23105.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:26:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab14-RB | 720 | CG4212-PB | 65..720 | 63..718 | 3280 | 100 | Plus |
| Rab14-RD | 648 | CG4212-PD | 1..648 | 71..718 | 3240 | 100 | Plus |
| Rab14-RA | 648 | CG4212-PA | 1..648 | 71..718 | 3240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:26:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab14-RD | 878 | CG4212-RD | 15..717 | 17..719 | 3515 | 100 | Plus |
| Rab14-RA | 1147 | CG4212-RA | 329..986 | 62..719 | 3290 | 100 | Plus |
| Rab14-RB | 1468 | CG4212-RB | 232..888 | 63..719 | 3285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:26:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14357754..14357937 | 357..540 | 920 | 100 | Plus |
| 2L | 23513712 | 2L | 14357520..14357700 | 177..357 | 905 | 100 | Plus |
| 2L | 23513712 | 2L | 14358006..14358184 | 541..719 | 895 | 100 | Plus |
| 2L | 23513712 | 2L | 14357295..14357454 | 17..176 | 800 | 100 | Plus |
| 2R | 25286936 | 2R | 17573952..17574104 | 194..346 | 240 | 77.1 | Plus |
| 2R | 25286936 | 2R | 6697481..6697567 | 197..283 | 180 | 80.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:26:02 has no hits.
BS23105.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:02 Download gff for
BS23105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab14-RC | 16..718 | 17..719 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:56:34 Download gff for
BS23105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab14-RD | 15..717 | 17..719 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:04:11 Download gff for
BS23105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab14-RD | 15..717 | 17..719 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:04:11 Download gff for
BS23105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14357295..14357454 | 17..176 | 100 | -> | Plus |
| 2L | 14357520..14357700 | 177..357 | 100 | -> | Plus |
| 2L | 14357755..14357937 | 358..540 | 100 | -> | Plus |
| 2L | 14358006..14358187 | 541..722 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:56:34 Download gff for
BS23105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14357295..14357454 | 17..176 | 100 | -> | Plus |
| arm_2L | 14357520..14357700 | 177..357 | 100 | -> | Plus |
| arm_2L | 14357755..14357937 | 358..540 | 100 | -> | Plus |
| arm_2L | 14358006..14358187 | 541..722 | 98 | -> | Plus |
BS23105.pep Sequence
Translation from 16 to 717
> BS23105.pep
MTLQCNNNNNFACFLGPNMTAAPYNYNYIFKYIIIGDMGVGKSCLLHQFT
EKKFMANCPHTIGVEFGTRIIEVDDKKIKLQIWDTAGQERFRAVTRSYYR
GAAGALMVYDITRRSTYNHLSSWLTDTRNLTNPSTVIFLIGNKSDLESTR
EVTYEEAKEFADENGLMFLEASAMTGQNVEEAFLETARKIYQNIQEGRLD
LNASESGVQHRPSQPSRTSLSSEATGAKDQCSC*
BS23105.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:12:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab14-PB | 239 | CG4212-PB | 23..239 | 17..233 | 1130 | 100 | Plus |
| Rab14-PD | 215 | CG4212-PD | 1..215 | 19..233 | 1117 | 100 | Plus |
| Rab14-PA | 215 | CG4212-PA | 1..215 | 19..233 | 1117 | 100 | Plus |
| Rab2-PB | 213 | CG3269-PB | 2..212 | 25..231 | 648 | 60.2 | Plus |
| Rab2-PA | 213 | CG3269-PA | 2..212 | 25..231 | 648 | 60.2 | Plus |
