Clone BS23108 Report

Search the DGRC for BS23108

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:231
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCG12818-RA
Protein status:BS23108.pep: full length peptide match
Sequenced Size:899

Clone Sequence Records

BS23108.complete Sequence

899 bp assembled on 2011-02-07

GenBank Submission: KX802122

> BS23108.complete
GAAGTTATCAGTCGACATGAATATTTTACCAAAAAAACGCTGGCATGTGC
GTACCAAGGAGAACATTGCCCGCGTGCGCCGGGATCAAGCGGCTGCCGCA
GCAGAAGAAAAAGTCCGGCAGGAGAAATTGGAATTTGCTGAAAGCGAGGC
ACGAATCAACTTCCTGCGCCGCCAATCGGGCTTGCCGGAGAAGGCCTCCA
AGGAATCTCGAGAGGAGTCGCAATGCAGTACTGAAACAACCAAAGGGGTG
GATCTCTTTGCCGACTACAAGGCGAGAGTGAAGACCACTAACAAAGACTT
GGAAAAGGAGCAAAAGGAGGAGCAGGAGAAGTATGAGAAGCAGATCGGCT
ACCTCACCTACTTGGGCCAGGACACCAATGAAGCTTTGAAAGTGCGCAGC
TGGTACGAGTTAGCCCCCAAAAGACCAGAAGTTGGGGATCCCACAGCTAC
TGAAACTCATCATAAGCAAAAGCTAGCCCACGATCCTCTGACCCTAATTA
ATGCTTTGTTGCCGCCAGAAAAAAAGGATCCCAAAAAGGCCACAAAAAGA
ATTCGCGAAAGGACACCCGCGCCTTCTCAGGAACCTTCAATACCCCACAA
GGACAAGAAATCCAAGAAAGATAAGAAGAAGCACAAGAGCAAAAATGGTT
CAAGGGAGACCCTTTTGGCCGAGGAACGCATAAAACGAGAAAAGCTCGAG
ACGCTAAGAAGGGAGCGCATGCGACGGGAAACAGCGGAACGCCAGCGTTC
CGAGGCTCTGTTCGCACCCAAGGAGCTGCCGGTGGCTGCCAGTGCCGAAT
CCACGCCGGCTTCGACGCCTAAGGTTGTCCAAAAGTACAACAGTCAGTTT
AATCCGGAGTTAGCAAAGCAAAATATGCTCTAGAAGCTTTCTAGACCAT

BS23108.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG12818-RA 867 CG12818-PA 1..867 17..883 4335 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG12818-RA 1001 CG12818-RA 39..905 17..883 4335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10331856..10332599 140..883 3720 100 Plus
3R 32079331 3R 10331697..10331798 39..140 510 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:10:23 has no hits.

BS23108.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-07 10:59:35 Download gff for BS23108.complete
Subject Subject Range Query Range Percent Splice Strand
CG12818-RA 39..905 17..883 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:49:15 Download gff for BS23108.complete
Subject Subject Range Query Range Percent Splice Strand
CG12818-RA 39..905 17..883 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:53:18 Download gff for BS23108.complete
Subject Subject Range Query Range Percent Splice Strand
CG12818-RA 39..905 17..883 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:53:18 Download gff for BS23108.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10331619..10331641 17..39 100 -> Plus
3R 10331698..10331797 40..139 100 -> Plus
3R 10331856..10332599 140..883 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:49:15 Download gff for BS23108.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6157420..6157519 40..139 100 -> Plus
arm_3R 6157341..6157363 17..39 100 -> Plus
arm_3R 6157578..6158321 140..883 100   Plus

BS23108.pep Sequence

Translation from 16 to 882

> BS23108.pep
MNILPKKRWHVRTKENIARVRRDQAAAAAEEKVRQEKLEFAESEARINFL
RRQSGLPEKASKESREESQCSTETTKGVDLFADYKARVKTTNKDLEKEQK
EEQEKYEKQIGYLTYLGQDTNEALKVRSWYELAPKRPEVGDPTATETHHK
QKLAHDPLTLINALLPPEKKDPKKATKRIRERTPAPSQEPSIPHKDKKSK
KDKKKHKSKNGSRETLLAEERIKREKLETLRRERMRRETAERQRSEALFA
PKELPVAASAESTPASTPKVVQKYNSQFNPELAKQNML*

BS23108.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:01:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG12818-PA 288 CG12818-PA 1..288 1..288 1468 100 Plus