BS23109.complete Sequence
1316 bp assembled on 2011-02-18
GenBank Submission: KX804025
> BS23109.complete
GAAGTTATCAGTCGACATGGCCGCGACCTCGTACATGACGCCGCCGAGCG
GTGATCTGGACATGGCCCTCGGAGGCGGTGGCTATCACACCTCGTCGCCG
CGCTCGGCGGCTGATGCCGGTGAAATGAAGTACATGCAGCACCATCATCA
TCATCATGCCGCTGCCGCGGCAGCTGCCCACCATCAGTTGCCCTCGTCGC
CATCGCCCAATGGCCAGGGCAATGGTGGCGGACTTGGATTGGGTTCCGGT
TCCGGGTTGGGCTCATGGAGTGCCCTCCATCCGGATCCGTGGATGCAAAC
CCATCATACGCACCATCTGCCCGCCGCCGCTGCCGTTGCCTCGGCCGCTG
ATACCGTCAAGCAGGAGATGTCGCATCTCTCGCAGCAGACGCGCATCCAA
CAGGGCATGGCCTCGCCCCATGCCGCCTGGCATGCCCCCCATGCGGGACA
CTATGCGCCAACGGGCGGGTCACCGTTGCAGTACCATCATGCCATGAACG
GAATGCTCCATCATCCGGCCCATGCGGTTGCAGCGGCCCATCATCAGAGT
GTGGCGCCACTGCATCATACGCTGCGCGGGGAATCGCCACAGCTGCACAT
ACACCATCACATGGGCGGCGGCGATCGGGATGCCATAAGCGGCGGCGAGG
AGGACACTCCCACGTCCGATGATCTGGAGGCCTTTGCCAAGCAGTTCAAG
CAGCGCCGAATCAAGCTGGGCTTTACCCAGGCCGATGTGGGCCTGGCACT
GGGCACTCTCTATGGCAATGTGTTCTCCCAGACGACCATCTGCAGATTCG
AGGCACTGCAGCTGAGCTTCAAGAACATGTGCAAGCTGAAGCCGCTGCTG
CAGAAGTGGCTGGAGGAGGCGGACTCCACAACGGGTTCACCCACGTCCAT
TGACAAGATCGCCGCTCAGGGGCGTAAGCGCAAGAAACGCACCAGCATCG
AGGTGAGCGTGAAGGGGGCACTGGAGCAGCACTTCCACAAGCAGCCGAAG
CCATCCGCCCAGGAGATAACCTCGTTGGCCGACTCCTTGCAGCTGGAGAA
GGAGGTGGTACGCGTGTGGTTCTGCAATCGGCGGCAGAAGGAGAAGCGCA
TGACGCCGCCAAATACGCTCGGCGGCGACATGATGGACGGCATGCCGCCG
GGCCATATGCATCATGGTGGCTATCATCCGCATCACGATATGCACGGCAG
TCCGATGGGCACACACTCCCACTCGCACAGTCCGCCCATGCTGAGCCCAC
AGAATATGCAATCCTCGGCGGTAGCGGCGCATCAGTTGGCGGCCCACTAG
AAGCTTTCTAGACCAT
BS23109.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:40:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vvl-RF | 2181 | CG10037-PF | 1..1284 | 17..1300 | 6420 | 100 | Plus |
| vvl-RE | 2181 | CG10037-PE | 1..1284 | 17..1300 | 6420 | 100 | Plus |
| vvl-RC | 2181 | CG10037-PC | 1..1284 | 17..1300 | 6420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vvl-RF | 4380 | CG10037-RF | 669..1952 | 17..1300 | 6420 | 100 | Plus |
| vvl-RE | 4380 | CG10037-RE | 669..1952 | 17..1300 | 6420 | 100 | Plus |
| vvl-RC | 4380 | CG10037-RC | 669..1952 | 17..1300 | 6420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6790826..6792109 | 17..1300 | 6420 | 100 | Plus |
| 2L | 23513712 | 2L | 12685229..12685408 | 695..874 | 510 | 85.6 | Plus |
| 2L | 23513712 | 2L | 12626573..12626754 | 683..864 | 505 | 85.2 | Plus |
| 2L | 23513712 | 2L | 12626964..12627021 | 1044..1101 | 245 | 94.8 | Plus |
| 2L | 23513712 | 2L | 12685617..12685674 | 1044..1101 | 200 | 89.7 | Plus |
Blast to na_te.dros performed 2014-11-26 15:40:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy4 | 6852 | gypsy4 GYPSY4 6852bp | 5951..6036 | 1148..1064 | 129 | 65.5 | Minus |
BS23109.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:37:59 Download gff for
BS23109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vvl-RA | 667..1950 | 17..1300 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:03:28 Download gff for
BS23109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vvl-RA | 669..1952 | 17..1300 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:46:32 Download gff for
BS23109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vvl-RC | 669..1952 | 17..1300 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:46:32 Download gff for
BS23109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6790826..6792109 | 17..1300 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:03:28 Download gff for
BS23109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6783926..6785209 | 17..1300 | 100 | | Plus |
BS23109.pep Sequence
Translation from 16 to 1299
> BS23109.pep
MAATSYMTPPSGDLDMALGGGGYHTSSPRSAADAGEMKYMQHHHHHHAAA
AAAAHHQLPSSPSPNGQGNGGGLGLGSGSGLGSWSALHPDPWMQTHHTHH
LPAAAAVASAADTVKQEMSHLSQQTRIQQGMASPHAAWHAPHAGHYAPTG
GSPLQYHHAMNGMLHHPAHAVAAAHHQSVAPLHHTLRGESPQLHIHHHMG
GGDRDAISGGEEDTPTSDDLEAFAKQFKQRRIKLGFTQADVGLALGTLYG
NVFSQTTICRFEALQLSFKNMCKLKPLLQKWLEEADSTTGSPTSIDKIAA
QGRKRKKRTSIEVSVKGALEQHFHKQPKPSAQEITSLADSLQLEKEVVRV
WFCNRRQKEKRMTPPNTLGGDMMDGMPPGHMHHGGYHPHHDMHGSPMGTH
SHSHSPPMLSPQNMQSSAVAAHQLAAH*
BS23109.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:07:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vvl-PF | 742 | CG10037-PF | 1..427 | 1..427 | 2322 | 100 | Plus |
| vvl-PE | 726 | CG10037-PE | 1..427 | 1..427 | 2322 | 100 | Plus |
| vvl-PC | 713 | CG10037-PC | 1..427 | 1..427 | 2322 | 100 | Plus |
| vvl-PD | 427 | CG10037-PD | 1..427 | 1..427 | 2322 | 100 | Plus |
| vvl-PA | 427 | CG10037-PA | 1..427 | 1..427 | 2322 | 100 | Plus |
