BS23111.complete Sequence
1235 bp assembled on 2011-01-25
GenBank Submission: KX801204
> BS23111.complete
GAAGTTATCAGTCCCCATGTCACAAGTAATACCAAACACGCCCACACCCC
AAATGCTGACGACATCAACGCCCATAGAACCCATGAAACCACCACCAGCG
TTTCCCACGATGAGCGGCGCAAACATACACGAGCAGGCGTCCGATATGAT
ACTGCGGGCCTCGACGATTTTCGAGGACGTCAAGCACGACGAGGCGAATG
TGGAGAATGTGCCCCATCACGGAGTTGAGACTGAGCCTGAGGACGACTCG
CACTACGGCGGGAACGGCAACTCTAAGATCCGCATAATGCCCAGTGTGAA
GCTAATGGCCACGACGCTCGCCTCCGATCCCAAGCGCAAGTTCGTCTGCC
CGTATGACAACTGTACAAAGAGCTACGGCAAGAGCTCCCACCTGCGGTCC
CACCTCACCTGGCACACGGGCATCAAGCCCTTCGTCTGCAGCGAGCCCAA
GTGCGGCAAGGGATTCACGCGCTCCGATGAGCTCAACCGGCACCTCCGGA
CGCACACCGGCGAGAAGCCCTTCGAGTGCATCCAGTGCACCAAGAAGTTT
TCCCGCAGCGACCACCTCACCAAGCACCTAGCTACCCACGACCGCCAGCT
AAAGGGCAGCACCCCGAAGCGAACAGTACCGAGCAGCAGTGGTGGAGTCC
GGCTCAAGCCCCCGAAGAAGCAGATTCATTCGGAGTCGGACTCGGGCTTC
CACTTCATGGCCGCCATGGTTGGTTGCGGGGAGCCGAGCATGAAGCACCA
CCACCAGCAGCAGCAGCATAACCAGCACCAGCAGCCCGTGAGCATTATCG
ACATCCACCACAAGCCGATAAAGATTAAGCTGGAACGGCCGGAGCACAGC
GACAAGTACCAGATCGTATCTCCTGAACACCAGATGGATAACCATGGCCA
CAACCAGAGCCAGTTGCCCGATTTCCTTAACCAGGCGAAGCCCGAGGTAA
AATACGAACCGACCGAAGAAATTGTAAATACCCTCTCTCAGCTACCGCCG
GCGGACGGACCCGGCACGTATGGGATGCCCCAGTTCGTTCAGGATCGGCC
TTTCTACTGCCGGCAGTGTGAGAAGCGGTTCAAGCGGCAGGACGACCTCA
ACCGACACATACGAACGCACACCGGGGAGAAGCCCTACGCCTGTCAGCAG
TGCTGTCGCCGGTTTGTGCGGAGCGACCACTTGAAAAAGCATCAGCAGAC
GCATTTGAAGATACGATAGAAGCTTTCTAGACCAT
BS23111.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:25:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3065-RA | 1203 | CG3065-PA | 1..1203 | 17..1219 | 6015 | 100 | Plus |
| CG3065-RB | 1203 | CG3065-PB | 1..1203 | 17..1219 | 6015 | 100 | Plus |
| CG3065-RC | 1137 | CG3065-PC | 1..1137 | 83..1219 | 5685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:25:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3065-RA | 1929 | CG3065-RA | 391..1593 | 17..1219 | 6015 | 100 | Plus |
| CG3065-RB | 1657 | CG3065-RB | 332..1534 | 17..1219 | 6015 | 100 | Plus |
| CG3065-RC | 1859 | CG3065-RC | 375..1523 | 71..1219 | 5715 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:25:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23970695..23971897 | 17..1219 | 6015 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:25:53 has no hits.
BS23111.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:01 Download gff for
BS23111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3065-RA | 389..1591 | 17..1219 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:56:30 Download gff for
BS23111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3065-RB | 332..1534 | 17..1219 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:04:08 Download gff for
BS23111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3065-RB | 332..1534 | 17..1219 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:04:08 Download gff for
BS23111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23970695..23971897 | 17..1219 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:56:30 Download gff for
BS23111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19858218..19859420 | 17..1219 | 100 | | Plus |
BS23111.pep Sequence
Translation from 16 to 1218
> BS23111.pep
MSQVIPNTPTPQMLTTSTPIEPMKPPPAFPTMSGANIHEQASDMILRAST
IFEDVKHDEANVENVPHHGVETEPEDDSHYGGNGNSKIRIMPSVKLMATT
LASDPKRKFVCPYDNCTKSYGKSSHLRSHLTWHTGIKPFVCSEPKCGKGF
TRSDELNRHLRTHTGEKPFECIQCTKKFSRSDHLTKHLATHDRQLKGSTP
KRTVPSSSGGVRLKPPKKQIHSESDSGFHFMAAMVGCGEPSMKHHHQQQQ
HNQHQQPVSIIDIHHKPIKIKLERPEHSDKYQIVSPEHQMDNHGHNQSQL
PDFLNQAKPEVKYEPTEEIVNTLSQLPPADGPGTYGMPQFVQDRPFYCRQ
CEKRFKRQDDLNRHIRTHTGEKPYACQQCCRRFVRSDHLKKHQQTHLKIR
*
BS23111.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:12:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3065-PA | 400 | CG3065-PA | 1..400 | 1..400 | 2202 | 100 | Plus |
| CG3065-PB | 400 | CG3065-PB | 1..400 | 1..400 | 2202 | 100 | Plus |
| CG3065-PC | 378 | CG3065-PC | 1..378 | 23..400 | 2087 | 100 | Plus |
| Spps-PA | 968 | CG5669-PA | 704..828 | 81..197 | 348 | 53.6 | Plus |
| Spps-PB | 985 | CG5669-PB | 704..828 | 81..197 | 348 | 53.6 | Plus |
| Spps-PA | 968 | CG5669-PA | 767..826 | 343..400 | 192 | 58.3 | Plus |
