Clone BS23117 Report

Search the DGRC for BS23117

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:231
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG13901-RA
Protein status:BS23117.pep: full length peptide match
Sequenced Size:701

Clone Sequence Records

BS23117.complete Sequence

701 bp assembled on 2011-01-25

GenBank Submission: KX802607

> BS23117.complete
GAAGTTATCAGTCGACATGTCCTACCAGAACTGGCTAAACTACCTGCAGG
CGGCGGAGAAGAACTCCATGATAAGTGGCCGCGCCCGCAAGGTGCTCTAC
AAATTCCCGGACGGCAGGCAAATGGCCGAGGAGTACAACATGGACACGGG
AATCGTGCAGCGGCGGGCCTGGAAATCGAAGAGCAACAAGATCATGGGCG
AGTCGGAGTGGGAAATCGAGCTGGGCGATGAGCCGCGTCAGTTAAACTGG
TCGGGCAACAAGCCACCAGGATCTGGCGAGGAAACGGACTCCCTGGCCGG
CGGAGATTTCACCCTGCGGGAGAGCAACACCGCGCCACTGCTGACCAAGC
GGATCACCAAGAAGAACATTGAGTGGCGCATCCGCAACATGCCCTACTCC
CTGGACACATACAGCGTAACCGCCGATCCCGAGAAGCGTGCCATAGTCGT
GCGCACCTCGAACAAGAAGTACTACAAGGTCATCCCGGTCCCGGAACTGG
ACCGCTGTGGGGTCAAGCCCGCGCAGGAGAGCCTCTCTGTCCACCACCAG
TTCAACACGCTGATCATTACCTACCAGAAACCAGATATCCTCTGCGAGAT
GGAGGCACAGGTGCTGCTTCTGCTCAAGAATGTCGACACCGAAACCGACA
TGGATGATCTGCTGAAGGGTCTGATGGCCAAATAAAAGCTTTCTAGACCA
T

BS23117.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:26:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG13901-RB 669 CG13901-PB 1..669 17..685 3345 100 Plus
CG13901-RA 669 CG13901-PA 1..669 17..685 3345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG13901-RB 919 CG13901-RB 135..804 17..686 3350 100 Plus
CG13901-RA 911 CG13901-RA 127..796 17..686 3350 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:26:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 836782..837451 686..17 3350 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:26:25 has no hits.

BS23117.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:06 Download gff for BS23117.complete
Subject Subject Range Query Range Percent Splice Strand
CG13901-RA 64..730 17..683 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:56:45 Download gff for BS23117.complete
Subject Subject Range Query Range Percent Splice Strand
CG13901-RA 127..793 17..683 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:04:20 Download gff for BS23117.complete
Subject Subject Range Query Range Percent Splice Strand
CG13901-RA 127..793 17..683 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:04:20 Download gff for BS23117.complete
Subject Subject Range Query Range Percent Splice Strand
3L 836785..837451 17..683 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:56:45 Download gff for BS23117.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 836785..837451 17..683 100   Minus

BS23117.pep Sequence

Translation from 16 to 684

> BS23117.pep
MSYQNWLNYLQAAEKNSMISGRARKVLYKFPDGRQMAEEYNMDTGIVQRR
AWKSKSNKIMGESEWEIELGDEPRQLNWSGNKPPGSGEETDSLAGGDFTL
RESNTAPLLTKRITKKNIEWRIRNMPYSLDTYSVTADPEKRAIVVRTSNK
KYYKVIPVPELDRCGVKPAQESLSVHHQFNTLIITYQKPDILCEMEAQVL
LLLKNVDTETDMDDLLKGLMAK*

BS23117.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:12:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG13901-PB 222 CG13901-PB 1..222 1..222 1164 100 Plus
CG13901-PA 222 CG13901-PA 1..222 1..222 1164 100 Plus