BS23121.complete Sequence
1076 bp assembled on 2011-01-25
GenBank Submission: KX805400
> BS23121.complete
GAAGTTATCAGTCGACATGAGTGCTATGTTGTTGATATCCTGCCTGACGC
TGCTCGTCTGTGTCCAGGCAGCGGTGACAGGGCCGGAAGCTCGATCCAGT
GTGGACGCCAAGGATCAGCAGCTGGCTACAGCGAGTGTTGGAATCCTCGA
CTCCGTGCTTCGAGGAAAGAGCCGCCAGTCGCGGTGCGTGAGATGCTACG
AGGATCGGGATCGTGATAGGTACTACAGCGGATACTCCAGTCGAACGGGC
GACGATATGCGAGGTAGTGCCTGGTACTACTCCGGCTACGATGATCGCAG
CAGGGATCGGGACTACGATCGCTACTACGATCGCTCCCGTTATTACGAAG
ATCGCTATACTCCGAGAACATACGACCGCTATGAGGGTCGTGGCTATGAT
GATTATAGAAGGGGATCTGCGTATGGAGGATCATACGATCGGGAACGCGG
ATATGGATACGACAACCGGGATCGGTACTACAGTGGTGATCGCTACAGCG
AGGGGTTATCCAGAGATCGCTACTACGATCGCTCGAGGACAAGCGGGTAT
GATCGTTATGATCCGTACGATCGCTACTACTCCAGGGGCCAGTCCGGTTT
TGATAACTCCGGACGAGGCTATTACTTTGCCACCGACGAGGATGAAAGCG
ACAGGAATCGAGGATATGGCTACTCCTACACTCGTCCCTCCTCCTCAATG
AGCTCGCCCTGCGGACGCATTTCCGGAAATTGTCCCTATGCCGGTGGCTC
CAAGGTCACCTCACCCGCCATTGGCAGCGACAGTTCGCGAGTGGGAGGCC
ATACCAATGTCCTGGGATCGGATGGAGGTCCTGGCAGTTGGAGTTATCTG
GGTGATCAGGAGAAGGTCGGTGGAAGCAGCAGTGGCAGCGGCGGTGGTAG
CAGCAGCAGCAGCAGCGGCAGTAGCAGCAGCAGCAGCTCAAGCGGCAGCG
GCGGCAGTCGGGAGAGGGAGCGGGAACGGGACAGGGAGCGGGATGCACAG
AGGCTTGCCCTCTTGTCACCCCTTGTAGCTCTTCCTATGGTGGCCGACCA
CGTCCTCTAGAAGCTTTCTAGACCAT
BS23121.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:26:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12911-RA | 1044 | CG12911-PA | 1..1044 | 17..1060 | 5220 | 100 | Plus |
| CG12911-RC | 1191 | CG12911-PC | 1..986 | 17..1002 | 4930 | 100 | Plus |
| CG12911-RF | 816 | CG12911-PF | 1..570 | 17..586 | 2850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:26:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12911-RA | 1597 | CG12911-RA | 171..1215 | 16..1060 | 5225 | 100 | Plus |
| CG12911-RC | 1571 | CG12911-RC | 171..1157 | 16..1002 | 4935 | 100 | Plus |
| CG12911-RF | 1196 | CG12911-RF | 171..741 | 16..586 | 2855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:26:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10258970..10259451 | 34..515 | 2410 | 100 | Plus |
| 2R | 25286936 | 2R | 10260008..10260430 | 581..1003 | 2115 | 100 | Plus |
| 2R | 25286936 | 2R | 10259514..10259586 | 514..586 | 365 | 100 | Plus |
| 2R | 25286936 | 2R | 10260835..10260894 | 1001..1060 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:26:35 has no hits.
BS23121.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:07 Download gff for
BS23121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12911-RA | 169..1212 | 17..1060 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:56:48 Download gff for
BS23121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12911-RA | 172..1215 | 17..1060 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:04:23 Download gff for
BS23121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12911-RA | 172..1215 | 17..1060 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:04:23 Download gff for
BS23121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10256857..10256874 | 17..34 | 100 | -> | Plus |
| 2R | 10258971..10259451 | 35..515 | 100 | -> | Plus |
| 2R | 10259516..10259585 | 516..585 | 100 | -> | Plus |
| 2R | 10260013..10260429 | 586..1002 | 100 | -> | Plus |
| 2R | 10260837..10260894 | 1003..1060 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:56:48 Download gff for
BS23121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6144362..6144379 | 17..34 | 100 | -> | Plus |
| arm_2R | 6146476..6146956 | 35..515 | 100 | -> | Plus |
| arm_2R | 6147021..6147090 | 516..585 | 100 | -> | Plus |
| arm_2R | 6147518..6147934 | 586..1002 | 100 | -> | Plus |
| arm_2R | 6148342..6148399 | 1003..1060 | 100 | | Plus |
BS23121.pep Sequence
Translation from 16 to 1059
> BS23121.pep
MSAMLLISCLTLLVCVQAAVTGPEARSSVDAKDQQLATASVGILDSVLRG
KSRQSRCVRCYEDRDRDRYYSGYSSRTGDDMRGSAWYYSGYDDRSRDRDY
DRYYDRSRYYEDRYTPRTYDRYEGRGYDDYRRGSAYGGSYDRERGYGYDN
RDRYYSGDRYSEGLSRDRYYDRSRTSGYDRYDPYDRYYSRGQSGFDNSGR
GYYFATDEDESDRNRGYGYSYTRPSSSMSSPCGRISGNCPYAGGSKVTSP
AIGSDSSRVGGHTNVLGSDGGPGSWSYLGDQEKVGGSSSGSGGGSSSSSS
GSSSSSSSSGSGGSRERERERDRERDAQRLALLSPLVALPMVADHVL*
BS23121.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:12:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12911-PA | 347 | CG12911-PA | 1..347 | 1..347 | 1849 | 100 | Plus |
| CG12911-PB | 361 | CG12911-PB | 1..361 | 1..347 | 1824 | 96.1 | Plus |
| CG12911-PC | 396 | CG12911-PC | 1..328 | 1..328 | 1759 | 100 | Plus |
| CG12911-PD | 410 | CG12911-PD | 1..342 | 1..328 | 1734 | 95.9 | Plus |
| CG12911-PE | 257 | CG12911-PE | 1..240 | 1..240 | 1040 | 82.1 | Plus |
