BS23122.complete Sequence
1214 bp assembled on 2011-02-08
GenBank Submission: KX800881
> BS23122.complete
GAAGTTATCAGTCGACATGGCTGTCATCATCAGCTGCCTATTACTTCTCC
TCGCGACAGTGTCGCAGTCCAAGACCGTGGGTTACGATGCGGCTGCCGAT
CGCAATTTGCTGGCTGCCGATCTCTACAACGCCGTGGCCGCCGATCATCT
GAACGAAAATGTGGTCATCTCGCCAGCGACCATACAGAGTTCCATGGCGC
TGGCCTTCGTGGGGGCCAAGGGTCAGACGGCATCGGAGTTGCAGCAGGGG
CTGCGTTTAGGTCCTGGCGATGCGGATGCGGTGAGCCAGCGCAGCGGTAG
TTACCAACAGGCCCTGACCCGCGACAACAACTTCCGGCTGGCCAACAACA
TTTACATCAACGAGAACCTTGAGTTCAAGGGCTCCTTCAGGGACGTGGCC
CAGCGCCAGTTCGACTCGAACATCGACAAGCTGGACTTTCACCCGCCGTA
CAACAAGCGCACGGCGGATGGCATCAACCGGGCGGTGGCCACCAAGACCA
ACGGCAAGATCACTGACATCCTCCGCGCCGAGCTGCTGAATGATCGCACC
GAGGGAGTGATCGTGAACGGCGTTTCCTACTCAGCCGCCTGGCAAAAGGC
CTTCCGGCTGGACAAGACCGAAAAGCGCTCCTTCCGCACCGGAAGCGGGC
AGTCTGTCAAGGTAGACACCATGTGGACGCTGCAGAACTTCAACTACGCC
GAGGTCAACTCCCTGGACGCCAAGGTGGTGGAGCTGCCCTACCAGAACCC
CGACTTCTCCATGCTGCTGCTCCTGCCCAATCGCAAGGATGGTCTGAGAT
CCCTGCAGCAGTCGCTGTCCGGTAAGAATCTTCTGGCCGAAATCGGAGCG
ATGAGCCAGCAAAAGGTGGAGGTGCTGCTGCCCAAGTTTAGTGTCACCTT
TGGCTTGGGTTTGGAGGGACCATTCAAGAAGCTGGGCGTCCATACAATGT
TCTCGAGAGATGGTGACTTTGGCAACATGTACCGCATGTTTGTCAGCCAT
TTCATTAACGCAGTGGAGCACAAGGCCAATGTGGAGGTCACTGAAGCTGG
CGTGGATCAACCCCTGGAAACTGGATTGCTTAAAGGACTCTTTTCGCGCT
CCAAGAAGTTCGAGGCAGATCATCCGTTCGTGTTCGCCATCAAGTACAAG
GACTCAATCGCCTTTATCGGACACATTGCTAACTATGCTTATGTCTAAAA
GCTTTCTAGACCAT
BS23122.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:25:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn43Ab-RB | 1182 | CG1865-PB | 1..1182 | 17..1198 | 5910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:25:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn43Ab-RB | 1329 | CG1865-RB | 78..1260 | 16..1198 | 5915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:25:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7152258..7153148 | 931..41 | 4440 | 99.9 | Minus |
| 2R | 25286936 | 2R | 7151919..7152065 | 1076..930 | 735 | 100 | Minus |
| 2R | 25286936 | 2R | 7151731..7151852 | 1198..1077 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:25:50 has no hits.
BS23122.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-09 09:49:55 Download gff for
BS23122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn43Ab-RB | 57..1236 | 17..1196 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:57:46 Download gff for
BS23122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn43Ab-RB | 79..1258 | 17..1196 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:00:46 Download gff for
BS23122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn43Ab-RB | 79..1258 | 17..1196 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:00:46 Download gff for
BS23122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7151733..7151852 | 1077..1196 | 100 | <- | Minus |
| 2R | 7151919..7152063 | 932..1076 | 100 | <- | Minus |
| 2R | 7152258..7153144 | 45..931 | 100 | <- | Minus |
| 2R | 7153537..7153564 | 17..44 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:57:46 Download gff for
BS23122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3039238..3039357 | 1077..1196 | 100 | <- | Minus |
| arm_2R | 3039424..3039568 | 932..1076 | 100 | <- | Minus |
| arm_2R | 3039763..3040649 | 45..931 | 100 | <- | Minus |
| arm_2R | 3041042..3041069 | 17..44 | 100 | | Minus |
BS23122.pep Sequence
Translation from 16 to 1197
> BS23122.pep
MAVIISCLLLLLATVSQSKTVGYDAAADRNLLAADLYNAVAADHLNENVV
ISPATIQSSMALAFVGAKGQTASELQQGLRLGPGDADAVSQRSGSYQQAL
TRDNNFRLANNIYINENLEFKGSFRDVAQRQFDSNIDKLDFHPPYNKRTA
DGINRAVATKTNGKITDILRAELLNDRTEGVIVNGVSYSAAWQKAFRLDK
TEKRSFRTGSGQSVKVDTMWTLQNFNYAEVNSLDAKVVELPYQNPDFSML
LLLPNRKDGLRSLQQSLSGKNLLAEIGAMSQQKVEVLLPKFSVTFGLGLE
GPFKKLGVHTMFSRDGDFGNMYRMFVSHFINAVEHKANVEVTEAGVDQPL
ETGLLKGLFSRSKKFEADHPFVFAIKYKDSIAFIGHIANYAYV*
BS23122.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:02:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn43Ab-PB | 393 | CG1865-PB | 1..393 | 1..393 | 1991 | 100 | Plus |
| Spn43Aa-PA | 390 | CG12172-PA | 7..390 | 8..390 | 537 | 33.2 | Plus |
| Spn55B-PA | 374 | CG10913-PA | 17..368 | 34..385 | 520 | 31.9 | Plus |
| Spn42Da-PD | 411 | CG9453-PD | 29..408 | 13..387 | 512 | 32.5 | Plus |
| Spn42Da-PG | 379 | CG9453-PG | 15..376 | 31..387 | 510 | 33.2 | Plus |
