BS23124.complete Sequence
1262 bp assembled on 2011-01-25
GenBank Submission: KX805952
> BS23124.complete
GAAGTTATCAGTCCACATGGCGCTCCAGTGCCGGACCTGCGGCAGCATCA
TCTACAATAAAATGCCCAAGAATCTCTTTCATATTGAGAACGAGAAGATG
CTGCAAGACATAAATCTTGTCACTGGCACAACACTCCACAACGATCCAGA
GCTGCCCAGCAGCATATGCGCCTGCTGCACGCTTGACTTGAACCAAGCGA
TTTTGTTCCGGGAGCGGTGCATCCTAACGCAGAAGCAGCTCGTCCATCGT
CGTAGATCTCCCGAAGCGAAGGAACCGGCTGAAGATGTTGAGGAGATGGC
ATCACCGCCGGATTGTCTGAACGATCCATTCGGGGAAGTCGATGAATACA
TTGTGGAATCCCCAGAAGAAGTTTTGGATCATGATAGTGATGCTCATCAT
GATCTGGATGAGGATAATTATATTGATTCTGTTGAAGATGTTGATGCGCT
TCAAGATATGGCTGAAGTAGCCGAAGAGGATTCTCAAGATGTCGAATCTC
TGATCTCAAGTGTACAGAAAGAACTTGAGAGCATTTGCAACGACGACAGC
AACTCGGATAACAACGATTACATGGAGCCCCAAAACGGTTCCTATTTCAA
TGAAACTATAAACGAATATGAAGTATCATCGAACCCAAACACACCGCTGC
CCGAATCGAAGAGTGCAGCAGGTCGGTCAACGAAGCCAGCGACCACAAAA
CCCAAGCGGAAAAAACAGTACGTTACGTGGAAAAATATGACCGAGGAGCA
GATCATAGAGCGTAAGCGACTGCAGCGTAAACGCGAGTGTGTTTGCGAAC
AGTGCGGCCGGCAATTCACCGACCAAAGCAATTTCAAGCTTCACATGCTG
CGGCACACGGGCAATAAGAACTTCGCCTGCCAGCAGTGTGGCAAGCGGTT
CTACACCGACCATCTCATGACGCTGCACCAACGAATCATTCACCAGGGCG
AGAAGCCATACGACTGCCGCTTTTGCACCAAGTCCTTTCACAATAGCAAC
ACTCGCCTCATCCACGAAAGGACTCACACCAATGCCAAACCCTACAGCTG
TCATCATTGCGATAAATGTTTTAAGTCAGCTTCGGGACGCAAGCGGCACG
AACTAATCCATACAGGAGTGCGAGCCTTTGCCTGCACCATCTGCAAACAA
TCCTTCCAGCGCAACACTCACTTAAAGGCCCATCTGCGATCTAAATTTCA
CACTGCAAAAGCGAAAACCATTGGTGCGGAGGTACTACAATTATAAAAGC
TTTCTAGACCAT
BS23124.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:26:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18764-RA | 1230 | CG18764-PA | 1..1230 | 17..1246 | 6150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:26:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18764-RA | 1378 | CG18764-RA | 106..1335 | 17..1246 | 6150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:26:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11627166..11628053 | 134..1021 | 4440 | 100 | Plus |
| 3R | 32079331 | 3R | 11626994..11627110 | 17..133 | 585 | 100 | Plus |
| 3R | 32079331 | 3R | 11628295..11628409 | 1132..1246 | 575 | 100 | Plus |
| 3R | 32079331 | 3R | 11628124..11628236 | 1019..1131 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:26:15 has no hits.
BS23124.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:04 Download gff for
BS23124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18764-RA | 63..1290 | 17..1244 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:56:40 Download gff for
BS23124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18764-RA | 106..1333 | 17..1244 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:04:16 Download gff for
BS23124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18764-RA | 106..1333 | 17..1244 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:04:16 Download gff for
BS23124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11626994..11627110 | 17..133 | 100 | -> | Plus |
| 3R | 11627166..11628052 | 134..1020 | 100 | -> | Plus |
| 3R | 11628126..11628236 | 1021..1131 | 100 | -> | Plus |
| 3R | 11628295..11628407 | 1132..1244 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:56:40 Download gff for
BS23124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7453848..7453958 | 1021..1131 | 100 | -> | Plus |
| arm_3R | 7454017..7454129 | 1132..1244 | 100 | | Plus |
| arm_3R | 7452716..7452832 | 17..133 | 100 | -> | Plus |
| arm_3R | 7452888..7453774 | 134..1020 | 100 | -> | Plus |
BS23124.pep Sequence
Translation from 16 to 1245
> BS23124.pep
MALQCRTCGSIIYNKMPKNLFHIENEKMLQDINLVTGTTLHNDPELPSSI
CACCTLDLNQAILFRERCILTQKQLVHRRRSPEAKEPAEDVEEMASPPDC
LNDPFGEVDEYIVESPEEVLDHDSDAHHDLDEDNYIDSVEDVDALQDMAE
VAEEDSQDVESLISSVQKELESICNDDSNSDNNDYMEPQNGSYFNETINE
YEVSSNPNTPLPESKSAAGRSTKPATTKPKRKKQYVTWKNMTEEQIIERK
RLQRKRECVCEQCGRQFTDQSNFKLHMLRHTGNKNFACQQCGKRFYTDHL
MTLHQRIIHQGEKPYDCRFCTKSFHNSNTRLIHERTHTNAKPYSCHHCDK
CFKSASGRKRHELIHTGVRAFACTICKQSFQRNTHLKAHLRSKFHTAKAK
TIGAEVLQL*
BS23124.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:12:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18764-PA | 409 | CG18764-PA | 1..409 | 1..409 | 2210 | 100 | Plus |
| CG17802-PA | 439 | CG17802-PA | 1..431 | 1..405 | 602 | 31.7 | Plus |
| M1BP-PA | 418 | CG9797-PA | 13..387 | 5..395 | 504 | 31.5 | Plus |
| ranshi-PA | 346 | CG9793-PA | 6..342 | 5..402 | 491 | 33.7 | Plus |
| CG31441-PA | 341 | CG31441-PA | 8..337 | 5..401 | 485 | 29.3 | Plus |
