BS23132.complete Sequence
1268 bp assembled on 2011-01-25
GenBank Submission: KX801985
> BS23132.complete
GAAGTTATCAGTCGACATGGGACGAGTTCCGGCAAAGATGCACACGCTCC
TCGCGCTCCTCCTCCAGCTTCTGGTGGCCTCCATCCACGCTATCGAGTGG
TCGCTTCCGGATGTGATCAATTCCATCGGAAATGTGGGCACCAGCATCGT
GGATCCCAGTCTTCTGCCCACACCCCAAGGACTCCTCGAAGGCAGCAAGC
AGCTCATCGCGGGATATCCATTCGAGTTCGTCTCCAACTCCCTGAACGTC
ATTTGCTCCCAGGCGCTGGCTTCAAACAAAATCAAGTCGAAATACTCGCC
GGATATCAATAAAATGAACTTCCAACTGCAAACGGCGTGTGAAAAGAAAA
ACTTCCCACTTACAAGTCCGGAGTCCATGTGGAAGAGTCCGCTTTTCGAT
GTCAAGAAGAAGGTCGTCATTCTGGCCACCGGATGGACCACCACCGTGAA
TGGTTCCGATACCATCGAAGTCTTCTCAAAGGCCTATAATTGCCGTGGGG
ATGTCAACTTTGTGGCGGTGGATGCTGCTCGTTTCGTTGATACCCTGTAC
ACCTGGTCGGCTTTCAATACGGAGGAGATTGGCGAGAACATCGCCCTCGG
ATTGGTGAAGCTTCTCGATCTGGTGCCGGTGGAGAATATCCACTTGATTG
GCCATAGCCTGGGCGCCCACATTGTGGGTTCGGCGGGACGGCACCTGCAA
CACCTGACCAATCAGACGATACCCAGGATTACTGGATTGGATCCGGCCAA
GCCGTGCTTCAACGAGGGTGAAGCCCTCTCTGGTCTGATGCGCGGAGATG
CCCACTTCGTCGATGTGATCCATAGCAATCCCGGGGTGCTGGGCAAGCGG
GATCCGGTGGGCGATGTGGACTTCTATCCGGGCGGAATGAGCCCCCTTGC
GGCGGGCTGTTTCTCGGTAACCTGTGCCCATGCCCGATCCTGGGAATATT
TTGCGGAAACCGTTTTCCCAGGCAATGAGCGCAACTTCATGGCCACTCGC
TGCAATTCGATATCCAAACTGCGCGATTTCCGCTGTCCGGGCGACGAGGT
GCCCATGGGATATGCGGTGCCGCAAAACATTAAGGGCAACTATTTCCTGG
AGGTCAGCGCCTCCGCACCGTTCGGCATGCATGCCTCCGTTGTGCGATCG
GCCCACTTGGAGCATTGCGGCCTGTGTCCCGAGTCCACGAGCACCACTGA
GGTGCCGAGCACCACAACCACGGGGAAGCCGGGTTCCTGGTTCTCAGGAT
AAAAGCTTTCTAGACCAT
BS23132.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:27:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5162-RB | 1236 | CG5162-PB | 1..1236 | 17..1252 | 6180 | 100 | Plus |
| CG5162-RA | 1236 | CG5162-PA | 1..1236 | 17..1252 | 6180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:27:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5162-RB | 1533 | CG5162-RB | 30..1265 | 17..1252 | 6180 | 100 | Plus |
| CG5162-RA | 1382 | CG5162-RA | 30..1265 | 17..1252 | 6180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:27:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17216359..17217097 | 514..1252 | 3695 | 100 | Plus |
| X | 23542271 | X | 17215736..17215996 | 255..515 | 1305 | 100 | Plus |
| X | 23542271 | X | 17215333..17215571 | 17..255 | 1195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:27:20 has no hits.
BS23132.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:13 Download gff for
BS23132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5162-RA | 32..1265 | 17..1250 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:57:07 Download gff for
BS23132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5162-RA | 30..1263 | 17..1250 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:04:37 Download gff for
BS23132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5162-RA | 30..1263 | 17..1250 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:04:37 Download gff for
BS23132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17215736..17215995 | 255..514 | 100 | -> | Plus |
| X | 17215333..17215570 | 17..254 | 100 | -> | Plus |
| X | 17216360..17217095 | 515..1250 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:57:07 Download gff for
BS23132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17109769..17110028 | 255..514 | 100 | -> | Plus |
| arm_X | 17109366..17109603 | 17..254 | 100 | -> | Plus |
| arm_X | 17110393..17111128 | 515..1250 | 100 | | Plus |
BS23132.pep Sequence
Translation from 16 to 1251
> BS23132.pep
MGRVPAKMHTLLALLLQLLVASIHAIEWSLPDVINSIGNVGTSIVDPSLL
PTPQGLLEGSKQLIAGYPFEFVSNSLNVICSQALASNKIKSKYSPDINKM
NFQLQTACEKKNFPLTSPESMWKSPLFDVKKKVVILATGWTTTVNGSDTI
EVFSKAYNCRGDVNFVAVDAARFVDTLYTWSAFNTEEIGENIALGLVKLL
DLVPVENIHLIGHSLGAHIVGSAGRHLQHLTNQTIPRITGLDPAKPCFNE
GEALSGLMRGDAHFVDVIHSNPGVLGKRDPVGDVDFYPGGMSPLAAGCFS
VTCAHARSWEYFAETVFPGNERNFMATRCNSISKLRDFRCPGDEVPMGYA
VPQNIKGNYFLEVSASAPFGMHASVVRSAHLEHCGLCPESTSTTEVPSTT
TTGKPGSWFSG*
BS23132.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:13:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5162-PB | 411 | CG5162-PB | 1..411 | 1..411 | 2172 | 100 | Plus |
| CG5162-PA | 411 | CG5162-PA | 1..411 | 1..411 | 2172 | 100 | Plus |
| CG5665-PB | 376 | CG5665-PB | 49..374 | 63..387 | 887 | 50.3 | Plus |
| CG5665-PC | 395 | CG5665-PC | 49..393 | 63..387 | 857 | 47.5 | Plus |
| CG18258-PA | 468 | CG18258-PA | 134..466 | 62..387 | 678 | 41 | Plus |
