Clone BS23138 Report

Search the DGRC for BS23138

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:231
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptCG5773-RA
Protein status:BS23138.pep: full length peptide match
Sequenced Size:416

Clone Sequence Records

BS23138.complete Sequence

416 bp assembled on 2011-01-25

GenBank Submission: KX802037

> BS23138.complete
GAAGTTATCAGTCGACATGGAAGGCCAACGCGTGGCAGTCGTCGCATTTG
CTGTTTTGCTCGCCGGATTGTGCGTGCTATCCGGTCTGAATGCGGCACCC
GTGGAATGCAATAATGGCGGTGGCATCCAGATCTCTGACGATGGTTTCCA
GAGCCAGACGCAAACCGGTCCCGGCTGCCAGACCCAGACCTCCGAGGATG
GAACCCAGAGCCAAAGCCAGAGTCAGTCGGGCAATGGCTACCAATCGCAG
ACGCAGTGCAGCGGCTCATCCTGTGGTCAGTTCAACACCTTCCCGCCGCT
ATTCACCATTAAGCCGCTGGAGCCATTGGCACCCATCACTTGGCAGCCAT
GGGGGCAAATGAGGAACAACCAGGTGCAGCAGCAGGTCAATTTTGGCTAA
AAGCTTTCTAGACCAT

BS23138.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:25:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG5773-RC 384 CG5773-PC 1..384 17..400 1920 100 Plus
CG5773-RB 384 CG5773-PB 1..384 17..400 1920 100 Plus
CG5773-RA 384 CG5773-PA 1..384 17..400 1920 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:25:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG5773-RC 1285 CG5773-RC 83..468 15..400 1930 100 Plus
CG5773-RB 514 CG5773-RB 83..468 15..400 1930 100 Plus
CG5773-RA 586 CG5773-RA 155..540 15..400 1930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:25:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18043113..18043421 400..92 1545 100 Minus
2R 25286936 2R 18043513..18043590 92..15 390 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:25:48 has no hits.

BS23138.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:01 Download gff for BS23138.complete
Subject Subject Range Query Range Percent Splice Strand
CG5773-RA 157..538 17..398 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:56:28 Download gff for BS23138.complete
Subject Subject Range Query Range Percent Splice Strand
CG5773-RA 157..538 17..398 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:04:07 Download gff for BS23138.complete
Subject Subject Range Query Range Percent Splice Strand
CG5773-RA 157..538 17..398 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:04:07 Download gff for BS23138.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18043115..18043421 92..398 100 <- Minus
2R 18043514..18043588 17..91 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:56:28 Download gff for BS23138.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13930620..13930926 92..398 100 <- Minus
arm_2R 13931019..13931093 17..91 100   Minus

BS23138.pep Sequence

Translation from 16 to 399

> BS23138.pep
MEGQRVAVVAFAVLLAGLCVLSGLNAAPVECNNGGGIQISDDGFQSQTQT
GPGCQTQTSEDGTQSQSQSQSGNGYQSQTQCSGSSCGQFNTFPPLFTIKP
LEPLAPITWQPWGQMRNNQVQQQVNFG*

BS23138.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:12:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5773-PC 127 CG5773-PC 1..127 1..127 679 100 Plus
CG5773-PB 127 CG5773-PB 1..127 1..127 679 100 Plus
CG5773-PA 127 CG5773-PA 1..127 1..127 679 100 Plus