Clone BS23139 Report

Search the DGRC for BS23139

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:231
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptGos28-RA
Protein status:BS23139.pep: full length peptide match
Sequenced Size:731

Clone Sequence Records

BS23139.complete Sequence

731 bp assembled on 2011-01-25

GenBank Submission: KX803213

> BS23139.complete
GAAGTTATCAGTCGACATGGGAGGATCCAGCTACGATGTGCTCAGGAAGC
AGGCGCGGAGCCTGGAAAACGAGATCGACCTGAAGCTGGTGGCATTCAGC
AAAATCGGAGCTGGCAGTGGAGGAGGTGGAAGTGGAGGACTAGGAGGCGT
TGACACATCGCCGCTCCTGGGCGAGCACGTCTTCGATTCGCTGTCGGAGG
AGATCGAGCAAATGCTGGAGAAGCTATCCTCGCTAAATGAGTCCATGTCC
GATTTGCCCGCCTCTGGAGCAGCCGCCATGCACACACTGCAGAGGCATCG
AGAGATCCTGCAGGGGTATCGCCAGGAGTTCAATAAGATCTGCGCCAATC
ACACAATGCGAATCGAGCGAGAGGAGCTGCTTCGTGGCTCAGGGTTGGCC
ACCAGCTCCGGCAGTCCATCCATCTCGGGCCTAAACCGGCGAGAAATGTA
CCTGAAGGAGAGCGGGCACCTCAACAGCGCCAGTCACTTGGTCAACGATC
AGATAAATATCGCGATTGAGACGCGTGACCATCTTCACGCCCAGCGACAA
GCATTCAAGCGGCTGCAGACCCGCTTTAACGATATCTCCAATCGATTCCC
ACTGATTTCCAGTCTCATTCAGCGCATCAACATTAAAAAGCGACGCGATT
CGCTGATCCTGGGAGCAGTTATTGGCTTCTGTGTGATCTTGCTGCTGCTC
TACGCCTTCAACTAGAAGCTTTCTAGACCAT

BS23139.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:27:39
Subject Length Description Subject Range Query Range Score Percent Strand
Gos28-RA 699 CG7700-PA 1..699 17..715 3495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:27:40
Subject Length Description Subject Range Query Range Score Percent Strand
Gos28-RA 894 CG7700-RA 59..757 17..715 3495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:27:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18664607..18664997 222..612 1955 100 Plus
3R 32079331 3R 18663882..18664067 38..223 930 100 Plus
3R 32079331 3R 18665065..18665170 610..715 530 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:27:38 has no hits.

BS23139.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:15 Download gff for BS23139.complete
Subject Subject Range Query Range Percent Splice Strand
Gos28-RA 55..753 17..715 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:57:16 Download gff for BS23139.complete
Subject Subject Range Query Range Percent Splice Strand
Gos28-RA 55..753 17..715 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:04:46 Download gff for BS23139.complete
Subject Subject Range Query Range Percent Splice Strand
Gos28-RA 59..757 17..715 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:04:46 Download gff for BS23139.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18663796..18663817 17..38 100 -> Plus
3R 18663883..18664067 39..223 100 -> Plus
3R 18664609..18664997 224..612 100 -> Plus
3R 18665068..18665170 613..715 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:57:16 Download gff for BS23139.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14489518..14489539 17..38 100 -> Plus
arm_3R 14489605..14489789 39..223 100 -> Plus
arm_3R 14490331..14490719 224..612 100 -> Plus
arm_3R 14490790..14490892 613..715 100   Plus

BS23139.pep Sequence

Translation from 16 to 714

> BS23139.pep
MGGSSYDVLRKQARSLENEIDLKLVAFSKIGAGSGGGGSGGLGGVDTSPL
LGEHVFDSLSEEIEQMLEKLSSLNESMSDLPASGAAAMHTLQRHREILQG
YRQEFNKICANHTMRIEREELLRGSGLATSSGSPSISGLNRREMYLKESG
HLNSASHLVNDQINIAIETRDHLHAQRQAFKRLQTRFNDISNRFPLISSL
IQRINIKKRRDSLILGAVIGFCVILLLLYAFN*

BS23139.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:13:32
Subject Length Description Subject Range Query Range Score Percent Strand
Gos28-PA 232 CG7700-PA 1..232 1..232 1161 100 Plus