Clone BS23145 Report

Search the DGRC for BS23145

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:231
Well:45
Vector:pDNR-Dual
Associated Gene/TranscriptSgf29-RA
Protein status:BS23145.pep: full length peptide match
Sequenced Size:902

Clone Sequence Records

BS23145.complete Sequence

902 bp assembled on 2011-01-25

GenBank Submission: KX802147

> BS23145.complete
GAAGTTATCAGTCGACATGCCACTGACTGCGGAGAGTGCCGCCCAACAGA
TTCAGGATCGCCTGAAGGACATTCAACAAAACATTCACAATGTGGACGAG
GAGCGTCGTCGTGCGGAAAACTCCATTGCTAGTCTGGTGCGATCTCTGCA
CGCCACCAATCAGAAGGTTAAGCCCCTGCTCAAGGCCAGTTTAACGGAGG
CTGCGCAGGAGGAGGCCACAATCCGAGCCGCACTGGCGAAAATCCACGAG
ATTCGAAGCATTCGCAATGAGAGGCGCATCCAAGCTCGCAACGCTGGAAA
TAAGGAGGCCATTCGACGGGGCGCCCTTATGAAAATGGTGCAGCTCTCAG
CGCAAACGTTGCCGTTATTCGTTGGCAAACTAGGAGAACGAGCACCAGCT
CTATGTGGAGCCATTCCCGCCGAGGGGAACTATGTGGCCAAGGTTGGCGA
CAATGTTGCCGCATTAGCTAAGGGAATTGATGAGGAGGAGAACTGGATCC
TGGCGGAAGTGGTGCAGTTCCTTCACCGTCAAAACAAATACGACGTAATT
GACATTGACGAGGAGCAAAAGGATCGCCATGTGCTGAGCAAGCGAAAGGT
CATCCCACTGCCTCTAATGCGTGCAAATCCTGAGACCGATGGTCACGCCC
TCTTCCCCAAGGACACAGTGGTAATGGCGCTATATCCACAGACCACCTGT
TTCTACAAGGCCATTGTCCATCGCCTGCCGCAAACCGCCACCGAGGATTA
CGAGGTGCTATTCGAGGATTCATCGTACACGAATGGCTATGCCGAACCCT
TGCCGGTCGCACAGCGCTATGTGATTGCATATCGTCCAACGAAAAAGGGG
GCTGGCAGTGGCAGCGGGAATCTATCATCAGCATAAAAGCTTTCTAGACC
AT

BS23145.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
Sgf29-RB 870 CG30390-PB 1..870 17..886 4350 100 Plus
Sgf29-RA 870 CG30390-PA 1..870 17..886 4350 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:27:59
Subject Length Description Subject Range Query Range Score Percent Strand
Sgf29-RB 1150 CG30390-RB 204..1077 15..888 4370 100 Plus
Sgf29-RA 1027 CG30390-RA 81..954 15..888 4370 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21292312..21292759 888..441 2240 100 Minus
2R 25286936 2R 21293037..21293268 284..53 1160 100 Minus
2R 25286936 2R 21292825..21292986 444..283 810 100 Minus
2R 25286936 2R 21293320..21293361 56..15 210 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:27:57 has no hits.

BS23145.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:18 Download gff for BS23145.complete
Subject Subject Range Query Range Percent Splice Strand
Sgf29-RA 118..985 17..884 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:57:26 Download gff for BS23145.complete
Subject Subject Range Query Range Percent Splice Strand
Sgf29-RA 83..950 17..884 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:04:55 Download gff for BS23145.complete
Subject Subject Range Query Range Percent Splice Strand
Sgf29-RA 83..950 17..884 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:04:55 Download gff for BS23145.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21292316..21292757 443..884 100 <- Minus
2R 21292827..21292984 285..442 100 <- Minus
2R 21293037..21293265 56..284 100 <- Minus
2R 21293321..21293359 17..55 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:57:26 Download gff for BS23145.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17179821..17180262 443..884 100 <- Minus
arm_2R 17180332..17180489 285..442 100 <- Minus
arm_2R 17180542..17180770 56..284 100 <- Minus
arm_2R 17180826..17180864 17..55 100   Minus

BS23145.pep Sequence

Translation from 16 to 885

> BS23145.pep
MPLTAESAAQQIQDRLKDIQQNIHNVDEERRRAENSIASLVRSLHATNQK
VKPLLKASLTEAAQEEATIRAALAKIHEIRSIRNERRIQARNAGNKEAIR
RGALMKMVQLSAQTLPLFVGKLGERAPALCGAIPAEGNYVAKVGDNVAAL
AKGIDEEENWILAEVVQFLHRQNKYDVIDIDEEQKDRHVLSKRKVIPLPL
MRANPETDGHALFPKDTVVMALYPQTTCFYKAIVHRLPQTATEDYEVLFE
DSSYTNGYAEPLPVAQRYVIAYRPTKKGAGSGSGNLSSA*

BS23145.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
Sgf29-PB 289 CG30390-PB 1..289 1..289 1458 100 Plus
Sgf29-PA 289 CG30390-PA 1..289 1..289 1458 100 Plus