Clone BS23146 Report

Search the DGRC for BS23146

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:231
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG13297-RA
Protein status:BS23146.pep: full length peptide match
Sequenced Size:470

Clone Sequence Records

BS23146.complete Sequence

470 bp assembled on 2011-01-25

GenBank Submission: KX804672

> BS23146.complete
GAAGTTATCAGTCGACATGTTGTGTTTTTACAGATCCAATATGAGTCTAT
CCTCGGTGCCAAGCAGCATTCAGCATGGGAACAAGGTAACGCGCTGTGGC
CTGAGCATCAACAATAAACTAGTGCAGGCCCTGATCCTCCTTTTGGCCTG
CATTCTCTTTGGTGCCAACATGAACTACGCCTCCTTTCCACCTGGCACTG
TCATCGATATCAAGCTGGGAGATGTCGCCCTCGAGCAGTTCAGCTATACG
CCAACCCGCGATGGATACGAGTTCAACTACACTCTTCCTGATGGAACTTT
TCGTGATGAGGTTGGCAAGGTCCTGAGTGGAACTTCAGCTGCCCAGGATC
TGGAAAATGCCAACAACTTGGCCAAGAACCACCGTCCCTCGCGTCAACAG
GGCCTTAAGGTTCGCAAGTTGTCCGGAAAATCTCTTGCATCTCTGGCCGG
ATAAAAGCTTTCTAGACCAT

BS23146.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:27:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG13297-RA 438 CG13297-PA 1..438 17..454 2190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:27:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG13297-RA 595 CG13297-RA 30..468 16..454 2195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:27:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6157088..6157348 276..16 1305 100 Minus
3L 28110227 3L 6156719..6156902 454..271 905 99.5 Minus
Blast to na_te.dros performed on 2014-11-26 16:27:29 has no hits.

BS23146.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:14 Download gff for BS23146.complete
Subject Subject Range Query Range Percent Splice Strand
CG13297-RA 40..462 30..452 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:57:12 Download gff for BS23146.complete
Subject Subject Range Query Range Percent Splice Strand
CG13297-RA 44..466 30..452 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:04:42 Download gff for BS23146.complete
Subject Subject Range Query Range Percent Splice Strand
CG13297-RA 44..466 30..452 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:04:42 Download gff for BS23146.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6156721..6156896 277..452 100 <- Minus
3L 6157088..6157334 30..276 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:57:12 Download gff for BS23146.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6149821..6149996 277..452 100 <- Minus
arm_3L 6150188..6150434 30..276 100   Minus

BS23146.pep Sequence

Translation from 16 to 453

> BS23146.pep
MLCFYRSNMSLSSVPSSIQHGNKVTRCGLSINNKLVQALILLLACILFGA
NMNYASFPPGTVIDIKLGDVALEQFSYTPTRDGYEFNYTLPDGTFRDEVG
KVLSGTSAAQDLENANNLAKNHRPSRQQGLKVRKLSGKSLASLAG*

BS23146.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:13:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG13297-PA 145 CG13297-PA 1..145 1..145 741 100 Plus