BS23162.complete Sequence
2243 bp assembled on 2011-02-18
GenBank Submission: KX802738
> BS23162.complete
GAAGTTATCAGTCGACATGAGCAGGACCTCCAGCCGCTCGCTCTTCCTGC
CGCTCTGCCTGCTCGTCCTGTCCGCGCTAAATGGCCCAGCGGCGGCGGCA
TCTCGCGTCCGCGTCAGCTCCTCGACCACCATGACCAGGAACATCGAGGA
GGAGAATGCCCTACTTTTACTTTTAGCTGGACCTCCCGTGCTATCTGAGT
CCATAATGGGTACGGTCGGCCGGCTGCCCTGCAACGTCACCCCGCCCATT
TACGAGGATCGAGTGGCGCTGGTTATCTGGTACAAAGTTGGCCTGAAGAC
TCCCATTTACAGTGTGGACACACGCGACTCGAACTTCGCCCAGGGAACGC
ACTGGTCGGATGAGACCTACCGGGAGCGGCTCTCCTTCCACGTGGAAGGA
CGTGCTGGCACGCTGACCATCAAGTCAACCACGGAGGACGACACGGGCGA
GTATCGCTGCCGCGTCGACTTCCAGAAGAGTCCGACTCGCAACTCCAAAG
TGAATTTAACTGTCATAATTCCGCCCGAGTCGGTGATTATATTGGACAGC
AAGGGTGTGACCATCGAGGATCACACGCTGGGTCCTTACAACGAGGGCTC
TGGGATAAACATCACGTGCGTGGCCATCGGCGGCCGCCCGCAGCCGAGGG
TTACCTGGCTGCATGGAAACACCGTCTACAAGAATGCCAGTGTGGGCCAA
CCCCTGTCCGAGCGACGGGTGGGCAATACCCTGTCCTTGGCTCGACTGGA
GCGCAGGAATCTTCACATGCAGCTAACGTGCCGGGCGGAGAACAATAATT
TGACAACGCCAATTATCAGCAGCGTCGTCCTCGACATGAACCTGCGTCCT
TTGATTGTGAAGCTGCAGGGGGAGAATCGAGCTCTGTCGGCGGGGAATTC
TTATCAGCTCAGTTGCGTTGTCATCGGAGCACGTCCAGCGCCGACGATTA
CCTGGTGGAAGGGCAGTACCCCCATGAAGAATACTCACGAGATTGCTACA
CCGGACGGTAATCTGACTACCTCGGTGCTGACATTCACGCCCACCATCGA
TGACCGCGGCAAGTTCCTCTCGTGTCGCGCGGAGCAGAGCATGATACCCG
AGTCCGGAATGGAGGACGGCTGGAAATTGGACATATATCACATACCGGTG
GTGAGCCTGGAGCTGGGAACCAATTCGCTTAACTCAACTCTGCGCGAGGG
AATCGATGTCTTCTTCGAGTGCAACATCAAATCGAATCCCTGGATATACG
AAGTTAGCTGGCGGCACAATGGTAAGATTCTAACCAACAATCCAGCCGAA
GGCATCGCCGTCTCCAACCAGAGTCTGGTGCTTCAAAATGCCAGCCGGGC
GAGAAGTGGCATCTACACCTGTGTGGGCAGTAATCGGGAGGGCGACGGCG
AGAGCAATCCCGTTCAGCTGGACATACGATTTGCTCCTGTTTGCCGACCT
CGCCAGCGTCTCTCCTATAGCTCGGGCAGGCATGAGACTGTCAAGGTGGC
CTGCGAAATTGATGCCAATCCCGCGGAGGCCACCTACGTTTGGAAATTCA
ATGCAACCCAGGGCGAAACAGTTGACATACCGGCTTCGCAAGTGGCCGTG
GATCGGGGCCGAAGTATAGCCCATTACACGCCCATGACGGAGAATGACTA
CGGTACGCTGCTCTGCTGGGCCACCAACGAAATTGGCGATCAAAGTGAAC
CCTGCGTATACACAATATTCCCAGCGGGCGAGCCGGATCCGTTGCTAAAC
TGCACGGTGCTCAACCAGACATCGACGGGCTTCCAAATCGAATGCATCGA
GGGCTTCAATGGCGGCCTGCAGCAGGACTTTATAATGGAGGTTTACATGA
ACGGAACGACACGACATCCCAAAATTTCAAAATCAAAGCGACCGTACTTT
GAGGTAAGCGGACTGGTGCCCGGAATGGGCTACAATGTCTTCCTCATTGC
CAACAACAGCAAGGGCCGTAGCAATGCCACCATTTTGCAGGTCTACACGC
TGAAGGATCCGGAGAAGCAGACGGTTAAAATAACATTCACTAAGTCCTTC
CAAGGACTTAGGCCTGCCTATACCAAAACAAAAGCGACAGCGACCACGAC
CAGCGACTGCGTTTGCGATGAGGATGAGTTCCTAAATCTGGGCAAGGGAA
TTAGCCACGACGAGGGCACAGACGCTGACCAGCAAGAAGGTAGCGGTGGA
CTATCCTTTTCTATAATTTTCTATTAAAAGCTTTCTAGACCAT
BS23162.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:58:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12484-RA | 2211 | CG12484-PA | 1..2211 | 17..2227 | 11040 | 100 | Plus |
CG12484-RB | 3606 | CG12484-PB | 1..2173 | 17..2189 | 10850 | 100 | Plus |
CG12484-RD | 3585 | CG12484-PD | 1..2152 | 17..2189 | 10500 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:58:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12484-RA | 3109 | CG12484-RA | 550..2761 | 16..2227 | 11045 | 100 | Plus |
CG12484-RB | 5113 | CG12484-RB | 550..2723 | 16..2189 | 10855 | 100 | Plus |
CG12484-RD | 5092 | CG12484-RD | 550..2702 | 16..2189 | 10505 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:58:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20468208..20468423 | 1431..1646 | 1080 | 100 | Plus |
2R | 25286936 | 2R | 20464618..20464828 | 632..842 | 1055 | 100 | Plus |
2R | 25286936 | 2R | 20462001..20462209 | 310..518 | 1045 | 100 | Plus |
2R | 25286936 | 2R | 20470413..20470616 | 2024..2227 | 1020 | 100 | Plus |
2R | 25286936 | 2R | 20469465..20469626 | 1727..1888 | 810 | 100 | Plus |
2R | 25286936 | 2R | 20467618..20467777 | 1271..1430 | 800 | 100 | Plus |
2R | 25286936 | 2R | 20464926..20465078 | 843..995 | 765 | 100 | Plus |
2R | 25286936 | 2R | 20465647..20465791 | 995..1139 | 725 | 100 | Plus |
2R | 25286936 | 2R | 20429634..20429776 | 16..158 | 715 | 100 | Plus |
2R | 25286936 | 2R | 20469984..20470120 | 1888..2024 | 685 | 100 | Plus |
2R | 25286936 | 2R | 20459479..20459620 | 171..312 | 680 | 98.6 | Plus |
2R | 25286936 | 2R | 20466809..20466940 | 1140..1271 | 660 | 100 | Plus |
2R | 25286936 | 2R | 20463860..20463974 | 519..633 | 575 | 100 | Plus |
2R | 25286936 | 2R | 20468799..20468885 | 1646..1732 | 405 | 97.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:58:19 has no hits.
BS23162.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:39:58 Download gff for
BS23162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12484-RA | 554..2762 | 17..2225 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:14:35 Download gff for
BS23162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12484-RA | 551..2759 | 17..2225 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:29:47 Download gff for
BS23162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12484-RA | 551..2759 | 17..2225 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:29:47 Download gff for
BS23162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20466809..20466939 | 1140..1270 | 100 | -> | Plus |
2R | 20467618..20467777 | 1271..1430 | 100 | -> | Plus |
2R | 20468208..20468422 | 1431..1645 | 100 | -> | Plus |
2R | 20468799..20468880 | 1646..1727 | 98 | -> | Plus |
2R | 20469466..20469625 | 1728..1887 | 100 | -> | Plus |
2R | 20469984..20470120 | 1888..2024 | 100 | -> | Plus |
2R | 20470414..20470614 | 2025..2225 | 100 | | Plus |
2R | 20429635..20429776 | 17..158 | 100 | -> | Plus |
2R | 20431843..20431863 | 159..179 | 100 | -> | Plus |
2R | 20459488..20459620 | 180..312 | 100 | -> | Plus |
2R | 20462004..20462209 | 313..518 | 100 | -> | Plus |
2R | 20463860..20463973 | 519..632 | 100 | -> | Plus |
2R | 20464619..20464828 | 633..842 | 100 | -> | Plus |
2R | 20464926..20465077 | 843..994 | 100 | -> | Plus |
2R | 20465647..20465791 | 995..1139 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:14:35 Download gff for
BS23162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16355123..16355282 | 1271..1430 | 100 | -> | Plus |
arm_2R | 16353152..16353296 | 995..1139 | 100 | -> | Plus |
arm_2R | 16354314..16354444 | 1140..1270 | 100 | -> | Plus |
arm_2R | 16317140..16317281 | 17..158 | 100 | -> | Plus |
arm_2R | 16319348..16319368 | 159..179 | 100 | -> | Plus |
arm_2R | 16346993..16347125 | 180..312 | 100 | -> | Plus |
arm_2R | 16349509..16349714 | 313..518 | 100 | -> | Plus |
arm_2R | 16351365..16351478 | 519..632 | 100 | -> | Plus |
arm_2R | 16352124..16352333 | 633..842 | 100 | -> | Plus |
arm_2R | 16352431..16352582 | 843..994 | 100 | -> | Plus |
arm_2R | 16355713..16355927 | 1431..1645 | 100 | -> | Plus |
arm_2R | 16356304..16356385 | 1646..1727 | 98 | -> | Plus |
arm_2R | 16356971..16357130 | 1728..1887 | 100 | -> | Plus |
arm_2R | 16357489..16357625 | 1888..2024 | 100 | -> | Plus |
arm_2R | 16357919..16358119 | 2025..2225 | 100 | | Plus |
BS23162.pep Sequence
Translation from 16 to 2226
> BS23162.pep
MSRTSSRSLFLPLCLLVLSALNGPAAAASRVRVSSSTTMTRNIEEENALL
LLLAGPPVLSESIMGTVGRLPCNVTPPIYEDRVALVIWYKVGLKTPIYSV
DTRDSNFAQGTHWSDETYRERLSFHVEGRAGTLTIKSTTEDDTGEYRCRV
DFQKSPTRNSKVNLTVIIPPESVIILDSKGVTIEDHTLGPYNEGSGINIT
CVAIGGRPQPRVTWLHGNTVYKNASVGQPLSERRVGNTLSLARLERRNLH
MQLTCRAENNNLTTPIISSVVLDMNLRPLIVKLQGENRALSAGNSYQLSC
VVIGARPAPTITWWKGSTPMKNTHEIATPDGNLTTSVLTFTPTIDDRGKF
LSCRAEQSMIPESGMEDGWKLDIYHIPVVSLELGTNSLNSTLREGIDVFF
ECNIKSNPWIYEVSWRHNGKILTNNPAEGIAVSNQSLVLQNASRARSGIY
TCVGSNREGDGESNPVQLDIRFAPVCRPRQRLSYSSGRHETVKVACEIDA
NPAEATYVWKFNATQGETVDIPASQVAVDRGRSIAHYTPMTENDYGTLLC
WATNEIGDQSEPCVYTIFPAGEPDPLLNCTVLNQTSTGFQIECIEGFNGG
LQQDFIMEVYMNGTTRHPKISKSKRPYFEVSGLVPGMGYNVFLIANNSKG
RSNATILQVYTLKDPEKQTVKITFTKSFQGLRPAYTKTKATATTTSDCVC
DEDEFLNLGKGISHDEGTDADQQEGSGGLSFSIIFY*
BS23162.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:26:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12484-PA | 736 | CG12484-PA | 1..736 | 1..736 | 3861 | 100 | Plus |
CG12484-PB | 1201 | CG12484-PB | 1..724 | 1..724 | 3800 | 100 | Plus |
CG12484-PD | 1194 | CG12484-PD | 1..717 | 1..724 | 3754 | 99 | Plus |
CG12484-PE | 1142 | CG12484-PE | 1..677 | 1..683 | 3470 | 97.1 | Plus |
CG34114-PC | 760 | CG34114-PC | 38..646 | 63..676 | 1223 | 39.6 | Plus |