BS23164.complete Sequence
2288 bp assembled on 2011-02-15
GenBank Submission: KX803370
> BS23164.complete
GAAGTTATCAGTCGACATGCCTCATACACACAGCAGGCATGGATCATCAG
GAGATGATTTATGCAGTACTGATGAAGTGAAGATTTTTAAAGACGAAGGA
GATCGCGAGGATGAAAAAATATCATCTGAGAACTTATTAGTTGAAGAAAA
GTCTAGCTTAATAGATTTAACTGAAAGTGAGGAAAAGGGTCACAAAATTT
CAAGGCCGGACCACAGCCCTGTTTTTAATAAGCTGGACACCCACGCCCCT
AGCTTTAACATGGGTTACTTAGTTTCTCCTTATTCGTATGCCAATGGTTC
TCCAAGTGGCTTACCGGTAACTATGGCCAACAAAATTGGACTGCCTCCGT
TTTTTTGTCACAATGCTGATCCGTTATCAACACCACCACCAGCGCATTGC
GGAATACCTCCATATCAACTGGATCCTAAGATGGGCTTAACTCGACCAGC
GCTATACCCATTTGCGGGAGGTCAATATCCTTACCCAATGCTAAGTTCAG
ATATGTCTCAAGTGGCATCATGGCACACTCCTTCTGTTTATTCTGCATCT
AGTTTTAGAACTCCTTATCCCTCCTCACTACCAATAAATACTACACTTGC
AAGTGATTTTCCATTCCGTTTTTCACCTAGCCTTTTACCTTCAGTACATG
CCACATCGCACCACGTTATAAATGCTCATTCTGCTATTGTGGGGGTTAGC
TCTAAACAAGAATGCGGTGTTCAGGACCCAACAACGAATAATAGATATCC
AAGGAACCTGGAAGCAAAGCACACATCAAATGCGCAATCAAATGAATCCA
AGGAGACAACAAATGATAAAAAAAAACCCCATATTAAGAAGCCACTAAAT
GCGTTCATGCTCTATATGAAGGAAATGCGTGCTAAGGTTGTTGCTGAATG
CACTCTGAAGGAATCGGCTGCGATTAATCAGATTTTAGGAAGACGGTGGC
ACGAACTTTCCCGCGAAGAACAAAGCAAATATTACGAAAAAGCTCGACAA
GAGCGCCAATTGCATATGGAATTGTATCCGGGGTGGAGCGCACGAGATAA
CTATGGTTACGTGTCAAAAAAGAAAAAGCGAAAAAAAGACAGATCGACAA
CGGATTCGGGAGGCAATAATATGAAAAAATGCCGCGCCCGTTTCGGACTA
GATCAACAGAGTCAGTGGTGCAAACCGTGCAGGCGCAAAAAGAAATGTAT
TCGTTATATGGAAGCCCTGAACGGCAATGGGCCCGCCGAAGACGGCAGCT
GTTTTGATGAGCACGGAAGTCAGCTAAGTGATGACGACGAAGATGACTAC
GATGATGATAAACTAGGCGGAAGTTGTGGAAGTGCCGACGAAACCAATAA
AATAGAAGATGAGGACTCGGAATCCCTTAATCAATCTATGCCAAGCCCAG
GCTGTCTTAGTGGATTGTCCAGTTTACAGAGCCCATCGACAACAATGAGC
TTGGCAAGCCCACTTAACATGAATGCCAATTCAGCAACCAATGTTATATT
TCCTGCTTCTTCTAATGCACTTTTAATTGTCGGCGCAGACCAGCCGACAG
CACAGCAACGACCCACATTGGTGTCAACCTCGGGATCGAGCAGCGGTTCA
ACCAGTAGCATAAGTACAACCCCAAATACGTCGAGTACAGTTTCGCCAGT
TACATGTATGACCGGTCCGTGTCTCGGTTCATCTCAGGAACGAGCCATGA
TGCTTGGAAATCGGTTCAGTCACTTGGGAATGGGGCTAAGTCCACCAGTA
GTTAGCACGAGCACCAGTAAATCTGAACCATTTTTTAAGCCTCATCCCAC
AGTTTGCAATAATCCTATATTTGCATTGCCATCAATTGGTAATTGTAGTT
TAAATATTTCTTCAATGCCAAACACATCCCGAAACCCTATTGGTGCTAAC
CCACGAGATATTAATAATCCCCTTAGCATCAATCAGCTGACTAAAAGACG
TGAATATAAAAATGTTGAGTTAATTGAAGCTAGTGAGTCAAAGACTATAG
TTGCCCATGCCGCTACATCCATTATTCAACATGTAGCAGTGAACGGCTAT
CATGCTAATCACTCGCTTTTAAATAGCAACTTGGGCCACCTTCATCACCA
ATTAAATAATCGTACAGAAAACCCGAATAGAAGTGAGCAGACAATGCTGT
CCGTAAGTAATCATTCTGTAAATAGCAGTGAATGCCATAAAGAATCTGAT
TCGCAGGCTATTGTATCTAGCAATCCTCCAAACGCTGGATCTTCCGATAA
CGGCGTTATTAGCGTTTCATAAAAGCTTTCTAGACCAT
BS23164.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:50:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pan-RR | 2256 | CG34403-PR | 1..2256 | 17..2272 | 11250 | 99.9 | Plus |
| pan-RA | 2256 | CG34403-PA | 1..2256 | 17..2272 | 11250 | 99.9 | Plus |
| pan-RB | 2256 | CG34403-PB | 1..2256 | 17..2272 | 11250 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:51:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pan-RR | 8472 | CG34403-RR | 438..2694 | 16..2272 | 11255 | 99.9 | Plus |
| pan-RA | 4129 | CG34403-RA | 306..2562 | 16..2272 | 11255 | 99.9 | Plus |
| pan-RB | 3023 | CG34403-RB | 565..2821 | 16..2272 | 11255 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:50:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 107401..108492 | 1181..2272 | 5445 | 99.9 | Plus |
| 4 | 1348131 | 4 | 94421..94615 | 752..946 | 975 | 100 | Plus |
| 4 | 1348131 | 4 | 94836..95003 | 946..1113 | 840 | 100 | Plus |
| 4 | 1348131 | 4 | 72429..72595 | 16..182 | 835 | 100 | Plus |
| 4 | 1348131 | 4 | 87015..87167 | 602..754 | 765 | 100 | Plus |
| 4 | 1348131 | 4 | 82637..82747 | 325..435 | 540 | 99.1 | Plus |
| 4 | 1348131 | 4 | 75068..75166 | 228..326 | 495 | 100 | Plus |
| 4 | 1348131 | 4 | 85711..85800 | 434..523 | 450 | 100 | Plus |
| 4 | 1348131 | 4 | 85852..85933 | 522..603 | 410 | 100 | Plus |
| 4 | 1348131 | 4 | 99404..99476 | 1111..1183 | 365 | 100 | Plus |
| 4 | 1348131 | 4 | 72815..72867 | 180..232 | 250 | 98.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:50:57 has no hits.
BS23164.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-15 10:19:35 Download gff for
BS23164.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pan-RB | 421..2674 | 17..2270 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:21 Download gff for
BS23164.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pan-RB | 566..2819 | 17..2270 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:32:57 Download gff for
BS23164.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pan-RB | 566..2819 | 17..2270 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:32:57 Download gff for
BS23164.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 82638..82746 | 326..434 | 99 | -> | Plus |
| 4 | 85712..85799 | 435..522 | 100 | -> | Plus |
| 4 | 85853..85933 | 523..603 | 100 | -> | Plus |
| 4 | 87017..87166 | 604..753 | 100 | -> | Plus |
| 4 | 94423..94615 | 754..946 | 100 | -> | Plus |
| 4 | 94837..95002 | 947..1112 | 100 | -> | Plus |
| 4 | 99406..99475 | 1113..1182 | 100 | -> | Plus |
| 4 | 72430..72594 | 17..181 | 100 | -> | Plus |
| 4 | 72817..72862 | 182..227 | 100 | -> | Plus |
| 4 | 75068..75165 | 228..325 | 100 | -> | Plus |
| 4 | 107403..108490 | 1183..2270 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:21 Download gff for
BS23164.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 93056..93220 | 17..181 | 100 | -> | Plus |
| arm_4 | 93443..93488 | 182..227 | 100 | -> | Plus |
| arm_4 | 95694..95791 | 228..325 | 100 | -> | Plus |
| arm_4 | 103264..103372 | 326..434 | 99 | -> | Plus |
| arm_4 | 106338..106425 | 435..522 | 100 | -> | Plus |
| arm_4 | 106479..106559 | 523..603 | 100 | -> | Plus |
| arm_4 | 107643..107792 | 604..753 | 100 | -> | Plus |
| arm_4 | 115049..115241 | 754..946 | 100 | -> | Plus |
| arm_4 | 115463..115628 | 947..1112 | 100 | -> | Plus |
| arm_4 | 120032..120101 | 1113..1182 | 100 | -> | Plus |
| arm_4 | 128029..129116 | 1183..2270 | 99 | | Plus |
BS23164.pep Sequence
Translation from 16 to 2271
> BS23164.pep
MPHTHSRHGSSGDDLCSTDEVKIFKDEGDREDEKISSENLLVEEKSSLID
LTESEEKGHKISRPDHSPVFNKLDTHAPSFNMGYLVSPYSYANGSPSGLP
VTMANKIGLPPFFCHNADPLSTPPPAHCGIPPYQLDPKMGLTRPALYPFA
GGQYPYPMLSSDMSQVASWHTPSVYSASSFRTPYPSSLPINTTLASDFPF
RFSPSLLPSVHATSHHVINAHSAIVGVSSKQECGVQDPTTNNRYPRNLEA
KHTSNAQSNESKETTNDKKKPHIKKPLNAFMLYMKEMRAKVVAECTLKES
AAINQILGRRWHELSREEQSKYYEKARQERQLHMELYPGWSARDNYGYVS
KKKKRKKDRSTTDSGGNNMKKCRARFGLDQQSQWCKPCRRKKKCIRYMEA
LNGNGPAEDGSCFDEHGSQLSDDDEDDYDDDKLGGSCGSADETNKIEDED
SESLNQSMPSPGCLSGLSSLQSPSTTMSLASPLNMNANSATNVIFPASSN
ALLIVGADQPTAQQRPTLVSTSGSSSGSTSSISTTPNTSSTVSPVTCMTG
PCLGSSQERAMMLGNRFSHLGMGLSPPVVSTSTSKSEPFFKPHPTVCNNP
IFALPSIGNCSLNISSMPNTSRNPIGANPRDINNPLSINQLTKRREYKNV
ELIEASESKTIVAHAATSIIQHVAVNGYHANHSLLNSNLGHLHHQLNNRT
ENPNRSEQTMLSVSNHSVNSSECHKESDSQAIVSSNPPNAGSSDNGVISV
S*
BS23164.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:11:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pan-PR | 751 | CG34403-PR | 1..751 | 1..751 | 3972 | 100 | Plus |
| pan-PA | 751 | CG34403-PA | 1..751 | 1..751 | 3972 | 100 | Plus |
| pan-PB | 751 | CG34403-PB | 1..751 | 1..751 | 3972 | 100 | Plus |
| pan-PD | 751 | CG34403-PD | 1..751 | 1..751 | 3972 | 100 | Plus |
| pan-PS | 733 | CG34403-PS | 1..733 | 1..751 | 3848 | 97.6 | Plus |
