BS23170.complete Sequence
1169 bp assembled on 2011-01-25
GenBank Submission: KX802256
> BS23170.complete
GAAGTTATCAGTCGACATGGAGCCGTTGTGCAACGCCAGTGAACCGCCAC
TTCGCCCGGAAGCGCGGAGCTCTGGCAACGGAGACTTACAGTTCCTCGGA
TGGAATGTGCCGCCGGATCAGATTCAATACATTCCGGAGCACTGGCTGAC
CCAGCTGGAACCGCCCGCGTCCATGCACTACATGCTGGGCGTCTTCTACA
TATTTCTCTTCTGCGCCTCGACAGTGGGTAATGGCATGGTCATCTGGATC
TTCAGCACATCCAAGTCGCTGAGGACACCATCCAATATGTTCGTGCTGAA
TCTGGCCGTCTTCGATCTGATCATGTGCCTCAAGGCGCCGATCTTCATCT
ACAACAGCTTCCATCGAGGATTCGCCCTGGGCAATACCTGGTGCCAGATA
TTCGCCTCCATTGGCTCCTATTCGGGTATTGGTGCTGGTATGACGAACGC
GGCCATAGGATACGATCGATACAATGTGATCACCAAGCCCATGAACCGCA
ACATGACCTTCACCAAGGCGGTGATAATGAATATAATCATCTGGTTGTAC
TGCACACCGTGGGTTGTCCTGCCGCTAACCCAGTTCTGGGATCGATTCGT
GCCAGAGGGCTACCTCACGTCCTGCTCCTTCGACTATCTTTCGGACAACT
TTGACACCCGGTTGTTTGTGGGCACCATCTTCTTTTTCAGCTTCGTGTGT
CCCACGCTGATGATCCTTTACTACTACTCGCAGATCGTGGGCCATGTCTT
CAGCCACGAAAAGGCCCTACGGGAGCAGGCCAAGAAAATGAACGTGGAGT
CGCTGCGCTCCAATGTGGACAAGAGCAAGGAGACGGCGGAGATACGGATT
GCGAAGGCGGCTATCACCATCTGCTTCCTGTTCTTCGTGTCGTGGACGCC
CTACGGCGTAATGTCGCTGATCGGGGCATTCGGGGATAAGAGTCTGCTTA
CACCAGGAGCCACGATGATCCCGGCCTGCACCTGCAAACTGGTGGCGTGC
ATAGACCCATTCGTCTATGCCATAAGTCACCCCAGATACCGCTTGGAGCT
GCAGAAGCGCTGTCCCTGGCTGGGAGTCAACGAAAAGTCTGGGGAGATCT
CTTCGGCGCAGTCCACGACCACCCAGGAGCAGCAACAGACTACCGCTGCA
TAGAAGCTTTCTAGACCAT
BS23170.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:28:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rh4-RA | 1137 | CG9668-PA | 1..1137 | 17..1153 | 5685 | 100 | Plus |
| Rh3-RA | 1152 | CG10888-PA | 97..1083 | 101..1087 | 1320 | 76 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:28:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rh4-RA | 1349 | CG9668-RA | 44..1186 | 13..1155 | 5700 | 99.9 | Plus |
| Rh3-RA | 1391 | CG10888-RA | 121..1107 | 101..1087 | 1320 | 76 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:28:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16861882..16862474 | 605..13 | 2950 | 99.8 | Minus |
| 3L | 28110227 | 3L | 16852690..16853243 | 1155..602 | 2770 | 100 | Minus |
| 3R | 32079331 | 3R | 20081344..20082330 | 1087..101 | 1320 | 76 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:28:33 has no hits.
BS23170.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:23 Download gff for
BS23170.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh4-RA | 555..1691 | 17..1153 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:57:42 Download gff for
BS23170.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh4-RA | 48..1184 | 17..1153 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:09 Download gff for
BS23170.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh4-RA | 48..1184 | 17..1153 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:09 Download gff for
BS23170.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16852692..16853239 | 606..1153 | 100 | <- | Minus |
| 3L | 16861882..16862470 | 17..605 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:57:42 Download gff for
BS23170.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16845792..16846339 | 606..1153 | 100 | <- | Minus |
| arm_3L | 16854982..16855570 | 17..605 | 100 | | Minus |
BS23170.pep Sequence
Translation from 16 to 1152
> BS23170.pep
MEPLCNASEPPLRPEARSSGNGDLQFLGWNVPPDQIQYIPEHWLTQLEPP
ASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFD
LIMCLKAPIFIYNSFHRGFALGNTWCQIFASIGSYSGIGAGMTNAAIGYD
RYNVITKPMNRNMTFTKAVIMNIIIWLYCTPWVVLPLTQFWDRFVPEGYL
TSCSFDYLSDNFDTRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKA
LREQAKKMNVESLRSNVDKSKETAEIRIAKAAITICFLFFVSWTPYGVMS
LIGAFGDKSLLTPGATMIPACTCKLVACIDPFVYAISHPRYRLELQKRCP
WLGVNEKSGEISSAQSTTTQEQQQTTAA*
BS23170.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:47:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rh4-PA | 378 | CG9668-PA | 1..378 | 1..378 | 2024 | 100 | Plus |
| Rh3-PA | 383 | CG10888-PA | 18..383 | 12..378 | 1459 | 74.2 | Plus |
| Rh5-PB | 382 | CG5279-PB | 16..355 | 18..357 | 879 | 48.2 | Plus |
| Rh5-PA | 382 | CG5279-PA | 16..355 | 18..357 | 879 | 48.2 | Plus |
| Rh2-PA | 381 | CG16740-PA | 19..376 | 13..371 | 630 | 39.8 | Plus |
