BS23171.complete Sequence
719 bp assembled on 2011-01-25
GenBank Submission: KX806182
> BS23171.complete
GAAGTTATCAGTCGACATGGACTGCGGCACATCTATGGTCAAATACATCC
TCTTCATATTCAACACCATTGTGTCGGTTATCGGCATCTTGGGCATTGTT
TATGGCGTGCTGATTCTGAAGAGCATCGGTGTAGTTGAAGTTAATGGACA
GGTGGGCTTCCCGATACAGGCTCTTATGCCGATCATTCTTATCAGCTTGG
GCTCGATTGTGGTCTTCATTTCATTCCTGGGATGCTGCGGTGCCATTCGC
GAATCCGTCTGCATGACCATGAGCTATGCCACCTTCTTGCTGATCCTGCT
GATCCTGCAGCTGACGTTCGTTGTTCTGCTGTTTACCCACAGGGAAGAGT
TTGAGAACGCAATGGGAAACGTTATCGAGAATGCATGGAATTCTGAACAT
ACTTATAAGGGAGGTGTCTTCGACACCATTCAGAAATCGTTGCACTGCTG
CGGATCAAGCTCTGCTCTGGACTACATCGGCAAGGGAGACTTGGTGCCCC
CAAGTTGTTGCAGCGGTTCGTGCCTGATCCCGACTAACTACTACCCGGGA
TGCCGTGGAAAGTTCGTCGAATTAATGACCACTGGATCTGATAACGCTAA
ATATGTGGGCATCGGCCTCATCGGAATAGAGCTGATCGGCTTTATCTTTG
CCTGCTGCCTGGCCAACAACGTGCGTAACTACAAGCGCCGGAACGCCTAC
TAAAAGCTTTCTAGACCAT
BS23171.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:28:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp42Ee-RB | 687 | CG10106-PB | 1..687 | 17..703 | 3435 | 100 | Plus |
| Tsp42Ee-RA | 687 | CG10106-PA | 1..687 | 17..703 | 3435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:28:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp42Ee-RB | 1381 | CG10106-RB | 94..780 | 17..703 | 3435 | 100 | Plus |
| Tsp42Ee-RA | 1394 | CG10106-RA | 107..793 | 17..703 | 3435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:28:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7017012..7017375 | 76..439 | 1820 | 100 | Plus |
| 2R | 25286936 | 2R | 7017434..7017630 | 439..635 | 970 | 99.5 | Plus |
| 2R | 25286936 | 2R | 7017688..7017761 | 630..703 | 370 | 100 | Plus |
| 2R | 25286936 | 2R | 7013057..7013118 | 17..78 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:28:38 has no hits.
BS23171.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:24 Download gff for
BS23171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ee-RA | 105..789 | 17..701 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:57:44 Download gff for
BS23171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ee-RA | 107..791 | 17..701 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:11 Download gff for
BS23171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ee-RA | 107..791 | 17..701 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:11 Download gff for
BS23171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7013057..7013116 | 17..76 | 100 | -> | Plus |
| 2R | 7017013..7017375 | 77..439 | 100 | -> | Plus |
| 2R | 7017435..7017626 | 440..631 | 100 | -> | Plus |
| 2R | 7017690..7017759 | 632..701 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:57:44 Download gff for
BS23171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2900562..2900621 | 17..76 | 100 | -> | Plus |
| arm_2R | 2904518..2904880 | 77..439 | 100 | -> | Plus |
| arm_2R | 2904940..2905131 | 440..631 | 100 | -> | Plus |
| arm_2R | 2905195..2905264 | 632..701 | 100 | | Plus |
BS23171.pep Sequence
Translation from 16 to 702
> BS23171.pep
MDCGTSMVKYILFIFNTIVSVIGILGIVYGVLILKSIGVVEVNGQVGFPI
QALMPIILISLGSIVVFISFLGCCGAIRESVCMTMSYATFLLILLILQLT
FVVLLFTHREEFENAMGNVIENAWNSEHTYKGGVFDTIQKSLHCCGSSSA
LDYIGKGDLVPPSCCSGSCLIPTNYYPGCRGKFVELMTTGSDNAKYVGIG
LIGIELIGFIFACCLANNVRNYKRRNAY*
BS23171.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:47:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp42Ee-PB | 228 | CG10106-PB | 1..228 | 1..228 | 1192 | 100 | Plus |
| Tsp42Ee-PA | 228 | CG10106-PA | 1..228 | 1..228 | 1192 | 100 | Plus |
| Tsp42Ea-PC | 226 | CG18817-PC | 1..226 | 1..228 | 519 | 45.2 | Plus |
| Tsp42Ea-PB | 226 | CG18817-PB | 1..226 | 1..228 | 519 | 45.2 | Plus |
| Tsp42Ea-PA | 226 | CG18817-PA | 1..226 | 1..228 | 519 | 45.2 | Plus |
