BS23175.complete Sequence
1040 bp assembled on 2011-02-07
GenBank Submission: KX804356
> BS23175.complete
GAAGTTATCAGTCGACATGCAGAGCCAGGCGAATCTGAACTGGGGCATCG
CGGCAGCGGGCAGGATAACGCAGGACTTTGTCACCGCCCTGGGAACCGTG
GAGAAGTCCCGTCACGTAGTGGTGGCCGTGGCCGATGTGGATGGCCAGCG
AGCGCAGCAGTTCGCCCAGAGGAATCAGATACCCAGGCACTACGATGGTT
TCGATGCACTGGCTCTGGATCGAGAGGTGGAAGTGGTGTATGTGGGCACC
CTGAATCCATTCCACTACGCTGTCGTCCATCTCATGTTGGCCAGGGGTAA
AAACGTGCTCTGTGAGACTCCCATGTGCTTGAGCGTGGAGCAGGCCAAGG
AGCTGTACACGTTGGCCGAGCAGCGTGGAGTGTTCCTCATGGAGGGCATG
TGGTCACGCTTCTTTCCTAGCTACGATCGTCTGAGGGAACTCCTGAAAAA
CGACGTCATTGGGGAGGTAACCCAGGTTAAGGTACAGCACGGTTTTCGCC
TGGCCCATATGGAACGGGTGTGCAACCGATCTCTGGGCGGTTCGATCCTT
ATGGACATCGGCATCTACGCCCTGCAGCTGGGTCAGTTCGTTTTCGGTGT
ATCTCCCGTCAAGATCCTGCCCAGCGGCACGCAGCTCAACAAGGAACGCG
TGGATGTGCAGATCGACTTTATGCTGGACTATGGCGATGGTCGTCGACTG
GTGGCTCTAGTAACCGGACTAGAGAATCTGGAAAACGATGCCGTCATCAC
GGGCACCAAAGGCGAGATTAAGCTGTCCAATTACTGGTGCTGCACCCAGA
TTAGCCGCTCTAATGCTCCTCCCGAATCCTGGCCTCTGCCGCGGGCCAAA
TTTGATTTCCACTACACGAACACCTGCGGACTGAGATACGAGGCGGAGGA
AGTGCGTCGCTGCATAGAGAAACGCCTGCTCGAGAGTCCCAAATTCACGC
ATGCCGAAAGTCTAGAGTTAGCAGCCATTGCGGATGAGATCCGACGGCAA
ATCGGTGTGGTATATGATGTGTGAAAGCTTTCTAGACCAT
BS23175.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:17:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3597-RA | 1008 | CG3597-PA | 1..1008 | 17..1024 | 5040 | 100 | Plus |
| CG3597-RB | 1014 | CG3597-PB | 1..1014 | 17..1024 | 4945 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:17:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3597-RA | 1223 | CG3597-RA | 99..1106 | 17..1024 | 5040 | 100 | Plus |
| CG3597-RB | 1229 | CG3597-RB | 99..1112 | 17..1024 | 4945 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:17:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2371047..2371426 | 396..17 | 1900 | 100 | Minus |
| 2L | 23513712 | 2L | 2370612..2370989 | 772..395 | 1890 | 100 | Minus |
| 2L | 23513712 | 2L | 2370269..2370522 | 1024..771 | 1270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:17:31 has no hits.
BS23175.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-07 12:15:39 Download gff for
BS23175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3597-RA | 99..1105 | 17..1023 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:53:14 Download gff for
BS23175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3597-RA | 99..1105 | 17..1023 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:56:43 Download gff for
BS23175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3597-RA | 99..1105 | 17..1023 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:56:43 Download gff for
BS23175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2370270..2370520 | 773..1023 | 100 | <- | Minus |
| 2L | 2370612..2370988 | 396..772 | 100 | <- | Minus |
| 2L | 2371048..2371426 | 17..395 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:53:14 Download gff for
BS23175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2370270..2370520 | 773..1023 | 100 | <- | Minus |
| arm_2L | 2370612..2370988 | 396..772 | 100 | <- | Minus |
| arm_2L | 2371048..2371426 | 17..395 | 100 | | Minus |
BS23175.pep Sequence
Translation from 16 to 1023
> BS23175.pep
MQSQANLNWGIAAAGRITQDFVTALGTVEKSRHVVVAVADVDGQRAQQFA
QRNQIPRHYDGFDALALDREVEVVYVGTLNPFHYAVVHLMLARGKNVLCE
TPMCLSVEQAKELYTLAEQRGVFLMEGMWSRFFPSYDRLRELLKNDVIGE
VTQVKVQHGFRLAHMERVCNRSLGGSILMDIGIYALQLGQFVFGVSPVKI
LPSGTQLNKERVDVQIDFMLDYGDGRRLVALVTGLENLENDAVITGTKGE
IKLSNYWCCTQISRSNAPPESWPLPRAKFDFHYTNTCGLRYEAEEVRRCI
EKRLLESPKFTHAESLELAAIADEIRRQIGVVYDV*
BS23175.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:01:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3597-PA | 335 | CG3597-PA | 1..335 | 1..335 | 1739 | 100 | Plus |
| CG3597-PB | 337 | CG3597-PB | 1..337 | 1..335 | 1726 | 99.4 | Plus |
| CG3609-PC | 335 | CG3609-PC | 5..329 | 7..332 | 670 | 42 | Plus |
| CG3609-PB | 335 | CG3609-PB | 5..329 | 7..332 | 670 | 42 | Plus |
| CG3609-PA | 335 | CG3609-PA | 5..329 | 7..332 | 670 | 42 | Plus |
