BS23176.complete Sequence
1808 bp assembled on 2011-02-15
GenBank Submission: KX802387
> BS23176.complete
GAAGTTATCAGTCGACATGTGCCAGCATCATGGGCTGACATCACAGTCGT
TGATGTCCGGTGGCTCGCACATATCCCTGCTGGGCAGCAGCGGCAGCAGC
GGTATGAGCGGCAGCGGCGTCGGCAGCAGCGGTCAGAGTGTCCCGCAATG
TCCCGCCGCTGTGGCAGCCGCGGATGCCGCAATGATGGGCTCCAATGCCG
GCGGCCATTGCCGCAGCCTGAGCGGCCTGAGCTCGATCAGCATACCGCCG
CCGCCGCCGGCGCTCTTCAATCCGTGCAGCTCGGCGCTGTCGCTGCAGCA
GGCGGCGGTAACCAGGTGGGGACCGCGCACCTCCTGCCCGGTCCACAGTC
CGTTTCGTGTGCGCGTGCCGAACGGCTCCATCTGCTCCGGACACCAGGCT
CTGCTCCATAGCCACGATGTGGTGGCCCGGGATGTCTACGGGGAGGAGGC
GCTGCGCGTCACCCCGCCCCCGATGGTGCCCTACCTCAATGGCGACGAGC
TGGACAACGTCGAGGGCGGCGAACTGCAGCATGTGACCCGGGTGCGACTG
GTGCAGTTTCAGAAGAACACGGACGAGCCCATGGGCATCACGCTGAAGAT
GACCGAGGACGGGCGGTGCATTGTGGCCAGGATTATGCACGGCGGGATGA
TTCATCGCCAGGCCACGCTGCACGTGGGCGACGAGATACGGGAGATCAAC
GGCCAGCCGGTGCAGCACCAGTCGGTTGGCCAATTGCAACGAATGCTGCG
CGAGGCACGCGGTTCTGTTACCTTCAAGATAGTTCCTTCGTACCGCAGCG
CTCCGCCCCCCTGCGAGCTTTTCAGGATCAGACCCGCTCCGGTGCTTATA
TTCGTGCGCGCCCAATTCGATTATAATCCGCTGGATGATGAGCTTATACC
CTGCGCCCAGGCGGGCATATCGTTCCAAGTGGGCGATATACTGCAGATTA
TTAGCAAGGACGATCATCACTGGTGGCAGGCGCGACTGGACACGGTGGGC
GGATCGGCCGGACTGATACCGTCGCCGGAGCTGCAGGAGTGGCGGATCGC
CTGCCAGACGGTCGACAAGACCAAGCAGGAGCAGGTTAACTGCTCCATCT
TCGGGCGCAAGAAGAAGCAATGCCGGGACAAATATCTGGCCAAGCACAAT
GCCATCTTCGACACGCTCGATGTGGTCACGTACGAGGAGGTTGTCAAGGT
GCCAGTTGGCGACCCGAACTTTCAGCGCAAAACGTTGGTGCTCTTGGGTG
CTCATGGGGTGGGCAGGCGGCACATTAAGAACACCTTGATATCGAAGTAC
CCCGACAAGTACGCCTATCCCATACCACATACAACGAGACCTGCCAAACC
CGAGGAGGAGAACGGACGCAGCTATTACTTTGTCTCGCACGATGAAATGA
TGGCGGACATCGGTGCGAATGAGTACTTGGAATACGGCACCCACGAGGAT
GCCATGTACGGCACCAAGTTGGACACCATCCGACGGATTCACACCGAGGG
CAAGATGGCCATATTGGATGTGGAGCCGCAGGCACTAAAAATACTCCGCA
CCGCCGAGTTCACGCCCTATGTCGTGTTTATAGCGGCGCCCTCACTGCAG
AACATAGCAGATTACGACGGCAGCCTGGAGCGACTGGCCAAGGAGTCGGA
GATGCTGCGCCAGCTATACGGTCACTTCTTCGATCTGACGATTGTGAACA
ACGATATTAGCGAGACGATTGCCACGCTGGAGACGGCCATCGACCGGGTG
CATACCACCCCGCAGTGGGTGCCCGTATCCTGGCTGTACTGAAAGCTTTC
TAGACCAT
BS23176.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:53:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CASK-RD | 1776 | CG6703-PD | 1..1776 | 17..1792 | 8880 | 100 | Plus |
| CASK-RA | 1776 | CG6703-PA | 1..1776 | 17..1792 | 8880 | 100 | Plus |
| CASK-RE | 1410 | CG6703-PE | 16..1410 | 398..1792 | 6975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:53:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CASK-RD | 4017 | CG6703-RD | 1320..3096 | 16..1792 | 8885 | 100 | Plus |
| CASK-RA | 4112 | CG6703-RA | 1415..3191 | 16..1792 | 8885 | 100 | Plus |
| CASK-RE | 2586 | CG6703-RE | 271..1665 | 398..1792 | 6975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:53:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21803683..21804065 | 398..16 | 1915 | 100 | Minus |
| 3R | 32079331 | 3R | 21791960..21792149 | 584..395 | 950 | 100 | Minus |
| 3R | 32079331 | 3R | 21786683..21786862 | 1792..1613 | 900 | 100 | Minus |
| 3R | 32079331 | 3R | 21786930..21787106 | 1612..1436 | 885 | 100 | Minus |
| 3R | 32079331 | 3R | 21791729..21791894 | 748..583 | 830 | 100 | Minus |
| 3R | 32079331 | 3R | 21789449..21789592 | 1085..942 | 720 | 100 | Minus |
| 3R | 32079331 | 3R | 21787786..21787911 | 1328..1203 | 630 | 100 | Minus |
| 3R | 32079331 | 3R | 21787979..21788103 | 1209..1085 | 610 | 99.2 | Minus |
| 3R | 32079331 | 3R | 21787172..21787280 | 1437..1329 | 545 | 100 | Minus |
| 3R | 32079331 | 3R | 21789662..21789760 | 946..848 | 495 | 100 | Minus |
| 3R | 32079331 | 3R | 21791531..21791604 | 817..744 | 355 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:53:30 has no hits.
BS23176.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-15 10:19:36 Download gff for
BS23176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CASK-RD | 1319..3093 | 17..1791 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:04:19 Download gff for
BS23176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CASK-RA | 1416..3190 | 17..1791 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:33:46 Download gff for
BS23176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CASK-RA | 1416..3190 | 17..1791 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:33:46 Download gff for
BS23176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21789662..21789760 | 848..946 | 100 | <- | Minus |
| 3R | 21790709..21790738 | 818..847 | 100 | <- | Minus |
| 3R | 21791531..21791599 | 749..817 | 100 | <- | Minus |
| 3R | 21791729..21791893 | 584..748 | 100 | <- | Minus |
| 3R | 21789449..21789587 | 947..1085 | 100 | <- | Minus |
| 3R | 21791961..21792146 | 398..583 | 100 | <- | Minus |
| 3R | 21786684..21786862 | 1613..1791 | 100 | <- | Minus |
| 3R | 21786930..21787105 | 1437..1612 | 100 | <- | Minus |
| 3R | 21787173..21787280 | 1329..1436 | 100 | <- | Minus |
| 3R | 21787786..21787908 | 1206..1328 | 100 | <- | Minus |
| 3R | 21787983..21788102 | 1086..1205 | 100 | <- | Minus |
| 3R | 21803684..21804064 | 17..397 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:04:19 Download gff for
BS23176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17616431..17616460 | 818..847 | 100 | <- | Minus |
| arm_3R | 17617253..17617321 | 749..817 | 100 | <- | Minus |
| arm_3R | 17617451..17617615 | 584..748 | 100 | <- | Minus |
| arm_3R | 17617683..17617868 | 398..583 | 100 | <- | Minus |
| arm_3R | 17612406..17612584 | 1613..1791 | 100 | <- | Minus |
| arm_3R | 17612652..17612827 | 1437..1612 | 100 | <- | Minus |
| arm_3R | 17612895..17613002 | 1329..1436 | 100 | <- | Minus |
| arm_3R | 17613508..17613630 | 1206..1328 | 100 | <- | Minus |
| arm_3R | 17613705..17613824 | 1086..1205 | 100 | <- | Minus |
| arm_3R | 17615171..17615309 | 947..1085 | 100 | <- | Minus |
| arm_3R | 17615384..17615482 | 848..946 | 100 | <- | Minus |
| arm_3R | 17629406..17629786 | 17..397 | 100 | | Minus |
BS23176.pep Sequence
Translation from 16 to 1791
> BS23176.pep
MCQHHGLTSQSLMSGGSHISLLGSSGSSGMSGSGVGSSGQSVPQCPAAVA
AADAAMMGSNAGGHCRSLSGLSSISIPPPPPALFNPCSSALSLQQAAVTR
WGPRTSCPVHSPFRVRVPNGSICSGHQALLHSHDVVARDVYGEEALRVTP
PPMVPYLNGDELDNVEGGELQHVTRVRLVQFQKNTDEPMGITLKMTEDGR
CIVARIMHGGMIHRQATLHVGDEIREINGQPVQHQSVGQLQRMLREARGS
VTFKIVPSYRSAPPPCELFRIRPAPVLIFVRAQFDYNPLDDELIPCAQAG
ISFQVGDILQIISKDDHHWWQARLDTVGGSAGLIPSPELQEWRIACQTVD
KTKQEQVNCSIFGRKKKQCRDKYLAKHNAIFDTLDVVTYEEVVKVPVGDP
NFQRKTLVLLGAHGVGRRHIKNTLISKYPDKYAYPIPHTTRPAKPEEENG
RSYYFVSHDEMMADIGANEYLEYGTHEDAMYGTKLDTIRRIHTEGKMAIL
DVEPQALKILRTAEFTPYVVFIAAPSLQNIADYDGSLERLAKESEMLRQL
YGHFFDLTIVNNDISETIATLETAIDRVHTTPQWVPVSWLY*
BS23176.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:11:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CASK-PD | 591 | CG6703-PD | 1..591 | 1..591 | 3122 | 100 | Plus |
| CASK-PA | 591 | CG6703-PA | 1..591 | 1..591 | 3122 | 100 | Plus |
| CASK-PG | 609 | CG6703-PG | 1..609 | 1..591 | 3093 | 97 | Plus |
| CASK-PE | 469 | CG6703-PE | 1..469 | 122..591 | 2455 | 99.1 | Plus |
| CASK-PH | 929 | CG6703-PH | 444..898 | 127..591 | 2385 | 97.8 | Plus |
