BS23177.complete Sequence
2486 bp assembled on 2011-03-28
GenBank Submission: KX801155
> BS23177.complete
GAAGTTATCAGTCGACATGACTTCCCTCGTGTACACCGTCTTTCACCTGG
CCTCGCTGCAATGTTCCGTGCGTCCGGAGATCTCGCCCTGCACCTGCGAA
ACGGGCAAAGCCTGGAATCATGTGGAGCTCTCCTGCGAGAAGTTGGAATC
CTTCAACGCCGTCGTGGACAGCCTGGCCAATAAGCTCAATGCCGACACCA
ATATCGACCTAAAGATCACGCACTCGCAACTCGACGACCTGGAAATGCGC
TCGTTTACGGATATGAACTTCAACTTGTACAAGCTACGGATGCAGTGGAA
CAGTCTAAAATCGCTGCCCGAGGTGCCGTTCCGCGGGTTATCGAATGTCA
CCTACCTAAGCATCGGCGACAACGACCTCGACGAGATCCCGAAGCACGCC
CTGAGCCACATGCCGAGCCTTTTGACTCTGGACATTGGGCGGTGCAAGAT
ACGGGCGGTGCAGCAGGAGGACTTCCGGGGCATACAGCGGGTAACGAATC
TGATTCTGGTGAGCAACATCATTACGCGCCTGGACCGAGGATCCTTTCCC
AAGAGCCTCCTCATCCTGCATCTGGGTAGAAACCAACTGGAGTCGCTGAA
TGGCTCGCTTCACGATCTGCACAACTTGGAGTCTCTGTTCATCAATGCGA
ATAATATCACATCGCTGGATGATGAGCTACCCGATGGAGGGCAGTTGCGC
CTCCTGATGGCTCACAATAATAGGTTGGAACGCCTGCCGGCCAATATGGC
CGGTATGCACAGCCTGGAGACGGTCCACATACACTGCAACCAGCTGAGAT
CCTTCGACCGTGTACTTCGCAATGCCGTCAATCTGTCCGAGGTCATGGCC
GATAACAATGAGCTGGAGTACCTGGCCCAGGATGAATTCGCCTCCTGCTC
CAAGGTGGAGACCCTGCAGATGGGCTGCAATCACATCAAGTCGCTCAACT
CCTCGCTACTGCCCATCCTCAAGCTGAAGAATGCCAACTTCTCGTTCAAC
GACATCGAAGAGTTCTCCATGGCGGAACTGCACGGATTGCGATCGCTGAA
GACACTCCAGCTGTCCAGTAATCGCATCCAACGACTGCTGCCCGATCCCC
GGGGAGTGCAGGAGCTGATGCTTGTCAATCTGGATCTGGATAACAATAGA
ATCGACTCTCTGAATGGAGCTTTGGCTGGCTTGGGCAATCTTCGGATACT
CAATTTGGCTGGAAACCGATTGGAACATCTCCAGGTGGGCGATTTCGATG
GCATGATTCGATTGGACATCCTCGACCTGACCGGGAATCAGCTAGCGGAG
CTCAAGCCCTTGGAAATGACTTTGTTGCCCAGCCTGAAAATCCTTAAGGT
TGCGTACAACAATATCACCAAGCTGGAACAGGACTTCAAGGGACTGCCCG
TGCTTTGCCAGGCCAACTTGACCAATAACCAGATTTCGACCATATCGAGT
GAACTCGTCACCAACACGCGCTGCAAAAATCACAATGTTCCCGGCAAACT
GGAGATACATCTAGATGACAATCCCATAATGTGTGACGTGGGATTGAACG
AGCTGTGTCGATTGATGGCCGTTCAGGAGGCACGAATTCGTGGTCGATCC
CAGTGCTTTGAGAATGACCAGGAGGTGTGCACCGTGCTCCCGATGCTATA
CAATGTGAACCTGCCCATAATGGTGACCAATCTAAAGTTGACGGGCCGCG
AGGTTCCAAAGCCGATGGTTCGGGTGATCGTACCATCGCTGATCAAGGCC
AATAATGAGCTATTACCGCCACTTATTGCCACTCTGGGTAATCCAGTGCT
CATTAGCACCGATTTGGTCAATCCGGTGATATCGCCACTACCACCACCAC
TTCTGCTGGCCACCACAACGCCGCCACCGCCTCTGCCACTTCCTGTGGAA
TCGGAAGTTGAGAAGAATGAGTCTACCACTGCGAATCCAGTGCCAACCAA
TTACACACAGGAGACCACGACAACCACAAGTACCACAACGACGACAACAA
CAACGGAGACCAGTAGTCAGGTGGCTCCCATCGAGATTATTACGACTACA
GCACCCACGACGACTACCACCAGCACCACAACACCGAAACCCAATGAAAC
GCTGCCCGTGATTGTGGAACTCCAGGATCCCAATCCACCGGACACTACAG
TCAATCAAACTGCCCTCGTTCCGCCAGTGGTTCTAGATCCCCTGCAGCAG
GATCTGGAAAGGGAGAGGGAACGCGAAAGGGAGCGAGAACTAGAGCGGGA
TCTGGACCACGAGGCGGTGGCCAAGACCGAGTACGAGACGGTCGAGTACA
TCCCCAATCTGGTGCAGCCTCCAGTGGGCAGTGATGCACTGACGCCGCCT
CCGAGCAAGGCGAATGCGCTGGAGGAGGACTCCGAGTCGGTGCACTCTAA
CTCAGTGCACGCGGAGTATCCCCACGCGGCGCAGAGCCTCCAGATTCCCG
AGGAACCGCCGGAGGAGTGAAAGCTTTCTAGACCAT
BS23177.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:36:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ltl-RB | 2454 | CG32372-PB | 1..2454 | 17..2470 | 12270 | 100 | Plus |
| ltl-RA | 2454 | CG32372-PA | 1..2454 | 17..2470 | 12270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:36:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ltl-RB | 4108 | CG32372-RB | 689..3142 | 17..2470 | 12270 | 100 | Plus |
| ltl-RA | 3622 | CG32372-RA | 203..2656 | 17..2470 | 12270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:36:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7524487..7525495 | 310..1318 | 5045 | 100 | Plus |
| 3L | 28110227 | 3L | 7526094..7527047 | 1517..2470 | 4770 | 100 | Plus |
| 3L | 28110227 | 3L | 7519685..7519977 | 17..309 | 1465 | 100 | Plus |
| 3L | 28110227 | 3L | 7525556..7525755 | 1318..1517 | 1000 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:36:53 has no hits.
BS23177.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-28 10:00:38 Download gff for
BS23177.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32372-RA | 198..2650 | 17..2469 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:38:39 Download gff for
BS23177.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltl-RA | 203..2655 | 17..2469 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:39 Download gff for
BS23177.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltl-RA | 203..2655 | 17..2469 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:39 Download gff for
BS23177.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7519685..7519977 | 17..309 | 100 | -> | Plus |
| 3L | 7524487..7525495 | 310..1318 | 100 | -> | Plus |
| 3L | 7525557..7525755 | 1319..1517 | 100 | -> | Plus |
| 3L | 7526095..7527046 | 1518..2469 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:38:39 Download gff for
BS23177.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7512785..7513077 | 17..309 | 100 | -> | Plus |
| arm_3L | 7517587..7518595 | 310..1318 | 100 | -> | Plus |
| arm_3L | 7518657..7518855 | 1319..1517 | 100 | -> | Plus |
| arm_3L | 7519195..7520146 | 1518..2469 | 100 | | Plus |
BS23177.pep Sequence
Translation from 16 to 2469
> BS23177.pep
MTSLVYTVFHLASLQCSVRPEISPCTCETGKAWNHVELSCEKLESFNAVV
DSLANKLNADTNIDLKITHSQLDDLEMRSFTDMNFNLYKLRMQWNSLKSL
PEVPFRGLSNVTYLSIGDNDLDEIPKHALSHMPSLLTLDIGRCKIRAVQQ
EDFRGIQRVTNLILVSNIITRLDRGSFPKSLLILHLGRNQLESLNGSLHD
LHNLESLFINANNITSLDDELPDGGQLRLLMAHNNRLERLPANMAGMHSL
ETVHIHCNQLRSFDRVLRNAVNLSEVMADNNELEYLAQDEFASCSKVETL
QMGCNHIKSLNSSLLPILKLKNANFSFNDIEEFSMAELHGLRSLKTLQLS
SNRIQRLLPDPRGVQELMLVNLDLDNNRIDSLNGALAGLGNLRILNLAGN
RLEHLQVGDFDGMIRLDILDLTGNQLAELKPLEMTLLPSLKILKVAYNNI
TKLEQDFKGLPVLCQANLTNNQISTISSELVTNTRCKNHNVPGKLEIHLD
DNPIMCDVGLNELCRLMAVQEARIRGRSQCFENDQEVCTVLPMLYNVNLP
IMVTNLKLTGREVPKPMVRVIVPSLIKANNELLPPLIATLGNPVLISTDL
VNPVISPLPPPLLLATTTPPPPLPLPVESEVEKNESTTANPVPTNYTQET
TTTTSTTTTTTTTETSSQVAPIEIITTTAPTTTTTSTTTPKPNETLPVIV
ELQDPNPPDTTVNQTALVPPVVLDPLQQDLERERERERERELERDLDHEA
VAKTEYETVEYIPNLVQPPVGSDALTPPPSKANALEEDSESVHSNSVHAE
YPHAAQSLQIPEEPPEE*
BS23177.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:08:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ltl-PB | 817 | CG32372-PB | 1..817 | 1..817 | 4194 | 100 | Plus |
| ltl-PA | 817 | CG32372-PA | 1..817 | 1..817 | 4194 | 100 | Plus |
| lbk-PB | 1252 | CG8434-PB | 296..658 | 65..419 | 300 | 27.2 | Plus |
| conv-PA | 1092 | CG8561-PA | 394..903 | 65..520 | 282 | 25.9 | Plus |
| conv-PB | 1092 | CG8561-PB | 394..903 | 65..520 | 282 | 25.9 | Plus |
| conv-PA | 1092 | CG8561-PA | 253..666 | 67..477 | 263 | 23.5 | Plus |
| lbk-PB | 1252 | CG8434-PB | 290..613 | 178..498 | 257 | 27.9 | Plus |
| conv-PA | 1092 | CG8561-PA | 179..570 | 90..478 | 234 | 22.2 | Plus |
