BS23180.complete Sequence
1490 bp assembled on 2011-02-18
GenBank Submission: KX803403
> BS23180.complete
GAAGTTATCAGTCGACATGATAATCAGCATGAATCAGACGGAGCCCGCCC
AGCTGGCAGATGGGGAGCATCTGAGTGGATACGCCAGCAGCAGCAACAGC
GTGCGCTATCTGGACGACCGGCATCCGCTGGACTACCTTGACCTGGGCAC
GGTGCACGCCCTCAACACCACTGCCATCAACACCTCGGATCTGAATGAGA
CTGGGAGCAGGCCGCTGGACCCGGTGCTTATCGATAGGTTCCTGAGCAAC
AGGGCGGTGGACAGCCCCTGGTACCACATGCTCATCAGCATGTACGGCGT
GCTAATCGTCTTCGGCGCCCTAGGCAACACCCTGGTTGTTATAGCCGTCA
TCCGGAAGCCCATCATGCGCACTGCTCGCAATCTGTTCATCCTCAACCTG
GCCATATCGGACCTACTTTTATGCCTAGTCACCATGCCGCTGACCTTGAT
GGAGATCCTGTCCAAGTACTGGCCCTACGGCTCCTGCTCCATCCTGTGCA
AAACGATTGCCATGCTGCAGGCACTTTGTATTTTCGTGTCGACAATATCC
ATAACGGCCATTGCCTTCGACAGATATCAGGTGATCGTGTACCCCACGCG
GGACAGCCTGCAGTTCGTGGGCGCGGTGACGATCCTGGCGGGGATCTGGG
CACTGGCACTGCTGCTGGCCTCGCCGCTGTTCGTCTACAAGGAGCTGATC
AACACAGACACGCCGGCACTCCTGCAGCAGATCGGCCTGCAGGACACGAT
CCCGTACTGCATTGAGGACTGGCCAAGTCGCAACGGGCGCTTCTACTACT
CGATCTTCTCGCTGTGCGTACAATACCTGGTGCCCATCCTGATCGTCTCG
GTGGCATACTTCGGGATCTACAACAAGCTGAAGAGCCGCATCACCGTGGT
GGCTGTGCAGGCGTCCTCCGCTCAGCGGAAGGTGGAGCGGGGGCGGCGGA
TGAAGCGCACCAACTGCCTACTGATCAGCATCGCCATCATCTTTGGCGTT
TCTTGGCTGCCGCTGAACTTTTTCAACCTGTACGCGGACATGGAGCGCTC
GCCGGTCACTCAGAGCATGCTAGTCCGCTACGCCATCTGCCACATGATCG
GCATGAGCTCCGCCTGCTCCAACCCGTTGCTCTACGGCTGGCTCAACGAC
AACTTCCGTAAAGAATTTCAAGAACTGCTCTGCCGTTGCTCAGACACTAA
TGTTGCTCTTAACGGTCACACGACAGGCTGCAACGTCCAGGCGGCGGCGC
GCAGGCGTCGCAAGTTGGGCGCCGAACTCTCCAAAGGCGAACTCAAGCTG
CTGGGGCCAGGCGGCGCCCAGAGCGGTACCGCCGGCGGGGAAGGCGGTCT
GGCGGCCACCGACTTCATGACCGGCCACCACGAGGGCGGACTGCGCAGCG
CCATAACCGAGTCGGTGGCCCTCACGGACCACAACCCCGTGCCCTCGGAG
GTCACCAAGCTGATGCCGCGGTAAAAGCTTTCTAGACCAT
BS23180.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:59:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NPFR-RA | 1458 | CG1147-PA | 1..1458 | 17..1474 | 7290 | 100 | Plus |
| NPFR-RD | 1470 | CG1147-PD | 1..1454 | 17..1470 | 7270 | 100 | Plus |
| NPFR-RC | 1389 | CG1147-PC | 1..1142 | 17..1158 | 5710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:59:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NPFR-RA | 3214 | CG1147-RA | 503..1961 | 17..1475 | 7295 | 100 | Plus |
| NPFR-RD | 2502 | CG1147-RD | 503..1956 | 17..1470 | 7270 | 100 | Plus |
| NPFR-RC | 2465 | CG1147-RC | 503..1644 | 17..1158 | 5710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:59:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6193253..6194150 | 578..1475 | 4490 | 100 | Plus |
| 3R | 32079331 | 3R | 6192022..6192413 | 19..410 | 1960 | 100 | Plus |
| 3R | 32079331 | 3R | 6192475..6192647 | 410..582 | 865 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:59:51 has no hits.
BS23180.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:39:58 Download gff for
BS23180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NPFR1-RA | 418..1873 | 17..1472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:14:45 Download gff for
BS23180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NPFR1-RA | 503..1958 | 17..1472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:30:11 Download gff for
BS23180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NPFR-RA | 503..1958 | 17..1472 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:30:11 Download gff for
BS23180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6192021..6192413 | 17..410 | 99 | -> | Plus |
| 3R | 6192476..6192645 | 411..580 | 100 | -> | Plus |
| 3R | 6193256..6194147 | 581..1472 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:14:45 Download gff for
BS23180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2017743..2018135 | 17..410 | 99 | -> | Plus |
| arm_3R | 2018198..2018367 | 411..580 | 100 | -> | Plus |
| arm_3R | 2018978..2019869 | 581..1472 | 100 | | Plus |
BS23180.pep Sequence
Translation from 16 to 1473
> BS23180.pep
MIISMNQTEPAQLADGEHLSGYASSSNSVRYLDDRHPLDYLDLGTVHALN
TTAINTSDLNETGSRPLDPVLIDRFLSNRAVDSPWYHMLISMYGVLIVFG
ALGNTLVVIAVIRKPIMRTARNLFILNLAISDLLLCLVTMPLTLMEILSK
YWPYGSCSILCKTIAMLQALCIFVSTISITAIAFDRYQVIVYPTRDSLQF
VGAVTILAGIWALALLLASPLFVYKELINTDTPALLQQIGLQDTIPYCIE
DWPSRNGRFYYSIFSLCVQYLVPILIVSVAYFGIYNKLKSRITVVAVQAS
SAQRKVERGRRMKRTNCLLISIAIIFGVSWLPLNFFNLYADMERSPVTQS
MLVRYAICHMIGMSSACSNPLLYGWLNDNFRKEFQELLCRCSDTNVALNG
HTTGCNVQAAARRRRKLGAELSKGELKLLGPGGAQSGTAGGEGGLAATDF
MTGHHEGGLRSAITESVALTDHNPVPSEVTKLMPR*
BS23180.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:26:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NPFR-PD | 489 | CG1147-PD | 1..485 | 1..485 | 2495 | 100 | Plus |
| NPFR-PA | 485 | CG1147-PA | 1..485 | 1..485 | 2495 | 100 | Plus |
| NPFR-PC | 462 | CG1147-PC | 1..462 | 1..485 | 2335 | 95.3 | Plus |
| NPFR-PB | 466 | CG1147-PB | 1..462 | 1..485 | 2335 | 95.3 | Plus |
| RYa-R-PA | 464 | CG5811-PA | 94..400 | 76..390 | 366 | 28.7 | Plus |
