BS23188.complete Sequence
902 bp assembled on 2011-01-25
GenBank Submission: KX803116
> BS23188.complete
GAAGTTATCAGTCGACATGCGCCCTCTGAGCGGTTTGATAGCGCTGGCGC
TGCTGCTGCTGCTCCTGCTGACGGCACCATCGAGTGCGGCGGACACGGAG
ACGGAGTCCTCCGGCAGCCCGCTGACGCCCGGCGCCGAAGAGCCGCGTCG
GGTGGTAAAGCGGGCGCCCACGTCCAGCTTCATTGGGATGCGCGGCAAGA
AGGACGAGGAGCACGACACCTCGGAGGGTAACTGGCTGGGATCGGGACCC
GATCCGCTGGATTACGCCGACGAGGAGGCGGACAGCAGCTACGCGGAGAA
CGGGCGGCGACTGAAGAAGGCACCGCTGGCCTTTGTTGGCCTGCGTGGCA
AGAAATTCATCCCAATCAACAACCGCCTGTCCGATGTCCTGCAGAGCCTG
GAGGAGGAGCGCCTGCGGGATAGCCTGCTGCAGGACTTCTTCGATCGCGT
GGCTGGGCGTGATGGCTCCGCGGTGGGCAAGAGAGCGCCCACCGGGTTCA
CGGGCATGCGAGGTAAGCGACCCGCCCTGCTGGCCGGGGACGATGACGCG
GAGGCGGACGAGGCCACGGAGCTGCAACAAAAGCGGGCGCCGGTCAATTC
CTTTGTGGGGATGCGCGGCAAGAAGGACGTCTCCCACCAGCACTACAAGC
GTGCAGCTCTCTCCGATTCCTATGACTTGAGAGGAAAACAGCAGCGCTTC
GCCGACTTCAACAGCAAATTTGTGGCGGTGCGTGGCAAGAAGAGCGATCT
GGAGGGCAACGGAGTCGGGATTGGTGACGATCATGAGCAAGCTCTGGTGC
ATCCATGGCTCTACCTGTGGGGAGAAAAGCGAGCGCCCAACGGATTCCTG
GGAATGCGAGGCAAACGGCCAGCACTTTTCGAGTAGAAGCTTTCTAGACC
AT
BS23188.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:29:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tk-RA | 870 | CG14734-PA | 1..870 | 17..886 | 4350 | 100 | Plus |
| Tk-RB | 894 | CG14734-PB | 1..652 | 17..668 | 3260 | 100 | Plus |
| Tk-RB | 894 | CG14734-PB | 676..894 | 668..886 | 1095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:29:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tk-RA | 1557 | CG14734-RA | 121..990 | 17..886 | 4350 | 100 | Plus |
| Tk-RB | 1618 | CG14734-RB | 158..809 | 17..668 | 3260 | 100 | Plus |
| Tk-RB | 1618 | CG14734-RB | 833..1051 | 668..886 | 1095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:28:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11995372..11996022 | 667..17 | 3255 | 100 | Minus |
| 3R | 32079331 | 3R | 11994964..11995168 | 872..668 | 1025 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:29:00 has no hits.
BS23188.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:27 Download gff for
BS23188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tk-RA | 160..1029 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:57:56 Download gff for
BS23188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tk-RA | 121..990 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:21 Download gff for
BS23188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tk-RA | 121..990 | 17..886 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:21 Download gff for
BS23188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11994964..11995168 | 668..872 | 100 | <- | Minus |
| 3R | 11995372..11996022 | 17..667 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:57:56 Download gff for
BS23188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7820686..7820890 | 668..872 | 100 | <- | Minus |
| arm_3R | 7821094..7821744 | 17..667 | 100 | | Minus |
BS23188.pep Sequence
Translation from 16 to 885
> BS23188.pep
MRPLSGLIALALLLLLLLTAPSSAADTETESSGSPLTPGAEEPRRVVKRA
PTSSFIGMRGKKDEEHDTSEGNWLGSGPDPLDYADEEADSSYAENGRRLK
KAPLAFVGLRGKKFIPINNRLSDVLQSLEEERLRDSLLQDFFDRVAGRDG
SAVGKRAPTGFTGMRGKRPALLAGDDDAEADEATELQQKRAPVNSFVGMR
GKKDVSHQHYKRAALSDSYDLRGKQQRFADFNSKFVAVRGKKSDLEGNGV
GIGDDHEQALVHPWLYLWGEKRAPNGFLGMRGKRPALFE*
BS23188.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:47:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tk-PA | 289 | CG14734-PA | 1..289 | 1..289 | 1492 | 100 | Plus |
| Tk-PB | 297 | CG14734-PB | 1..297 | 1..289 | 1473 | 97.3 | Plus |
