Clone BS23193 Report

Search the DGRC for BS23193

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:231
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptCG3246-RA
Protein status:BS23193.pep: full length peptide match
Sequenced Size:1370

Clone Sequence Records

BS23193.complete Sequence

1370 bp assembled on 2011-02-18

GenBank Submission: KX804679

> BS23193.complete
GAAGTTATCAGTCGACATGAAGCCGTTGATAGTGGTCGTGCTCGTGGGCC
TGATGGCAAGTGGCTGCCACATTGTTCACTCCCAGGAGCCTGGCGATGCT
GTGGAGCAGGAAGCCAGCGAGTCGGATGACGCACTTAAGATCAAAGAGAG
TCAGGCCAGCATAGCCGCCCAGGTGGAGGCCATGCTCGTGCACTTTCAGC
AGGAGGATCCGCAGGGTCTGCCCGGCGTGCCCGTGCCCGATCCGTTGGAG
GTGCCCAATGTGAAGAAGAGCATGGGCATGGCCAATCTGGACATGAAGCA
GGTCAAGGCGTATGGCTTGTCCAAGTTCCGCATTGATAAAATGAACCTAG
ACCTGAAGGAAATGAGATTCAACGGTGGCCTCCAGCTGGACCAGATGCTG
GTCAAGGGCCAGTACACCCTCAGTTCATTCTTTTCGAAAGCCAATGGACC
CTTTACAGTAGTCCTGAAGAATGTCTATGCCGAGGCAACCGCCTTCTTGG
CCGTCGAACGAGACGGTCAGCTGGCCACGGACCGCATCAAGATCGACATC
ACATTCTCGGACATGACAATGGACTTCCAGAACCTCGGCCTGGTGGGCAG
TGTCTTTCAGAGCGTGGTGAACGGTGCGCCCAACTTGGTCTTCGACGCCA
TGAAGCCATTTATGCTCCAGGAGGCGGACAAAAAGCTGCGCAGCGAGATC
AACGTAATGATCCAGAAAACCTTGGGCGAACGCCGACTGCCCAATTCCAT
AACGCCGCTGGACAGCGCCATTGCCATGGCACGCAAGATGGTTCGGCAGA
AGGGCTTCGATCCGTACCACCTGCCTGATGTCAATCGCACCATGGGCGTG
TTCAGTGTCCAGTTAGCACACACCTGGATCAATGGAATCTCTAGCTTCTA
CCGCGTGGGCAACATAACCGCTGGCATGGCCAACAAAACGGTGTCGGTCG
TTCTGCAAATAGGCACCCAGCAGGTGACGGGAGCCGGCCAGTGGGAGGTG
GGTGTGGGCATGATGACACGCGTCGGTCACGTACAATTTACGGTTCAGCA
CATACGCGCCACCGTTGGCCTGAGCCAATCCCTGGACACACGCAAGCGGG
CGCAGATCACCGATCTGCAGTTTGACATGGGCAACATACAGGTGCGATGT
GACGGAGCGGGAACGCTGGACTACGTCATGGAGTTTGCGGTGAACGTCAT
TCCCAACCTGCTGCGCTACCAGATCATGGACGCCATCGAGAACCCCATCA
AGCAGCGTGTGCAGGAGAAGTTCAACACCATCGATGTGGAGCAGGTCATC
AAGACCATGGCTCAGAACAACTTCAACTTTGACCCAAAGCTGTTGGGCTT
GTGAAAGCTTTCTAGACCAT

BS23193.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:41:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG3246-RA 1338 CG3246-PA 1..1338 17..1354 6690 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:41:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG3246-RA 1511 CG3246-RA 102..1439 17..1354 6690 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:41:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3460394..3461380 1354..368 4935 100 Minus
2L 23513712 2L 3461438..3461707 367..98 1350 100 Minus
2L 23513712 2L 3461770..3461851 98..17 410 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:41:01 has no hits.

BS23193.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:38:00 Download gff for BS23193.complete
Subject Subject Range Query Range Percent Splice Strand
CG3246-RA 125..1461 17..1353 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:03:36 Download gff for BS23193.complete
Subject Subject Range Query Range Percent Splice Strand
CG3246-RA 102..1438 17..1353 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:46:54 Download gff for BS23193.complete
Subject Subject Range Query Range Percent Splice Strand
CG3246-RA 102..1438 17..1353 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:46:54 Download gff for BS23193.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3460395..3461380 368..1353 100 <- Minus
2L 3461438..3461706 99..367 100 <- Minus
2L 3461770..3461851 17..98 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:03:36 Download gff for BS23193.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3460395..3461380 368..1353 100 <- Minus
arm_2L 3461438..3461706 99..367 100 <- Minus
arm_2L 3461770..3461851 17..98 100   Minus

BS23193.pep Sequence

Translation from 16 to 1353

> BS23193.pep
MKPLIVVVLVGLMASGCHIVHSQEPGDAVEQEASESDDALKIKESQASIA
AQVEAMLVHFQQEDPQGLPGVPVPDPLEVPNVKKSMGMANLDMKQVKAYG
LSKFRIDKMNLDLKEMRFNGGLQLDQMLVKGQYTLSSFFSKANGPFTVVL
KNVYAEATAFLAVERDGQLATDRIKIDITFSDMTMDFQNLGLVGSVFQSV
VNGAPNLVFDAMKPFMLQEADKKLRSEINVMIQKTLGERRLPNSITPLDS
AIAMARKMVRQKGFDPYHLPDVNRTMGVFSVQLAHTWINGISSFYRVGNI
TAGMANKTVSVVLQIGTQQVTGAGQWEVGVGMMTRVGHVQFTVQHIRATV
GLSQSLDTRKRAQITDLQFDMGNIQVRCDGAGTLDYVMEFAVNVIPNLLR
YQIMDAIENPIKQRVQEKFNTIDVEQVIKTMAQNNFNFDPKLLGL*

BS23193.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3246-PA 445 CG3246-PA 1..445 1..445 2255 100 Plus