BS23195.complete Sequence
3116 bp assembled on 2011-02-16
GenBank Submission: KX800997
> BS23195.complete
GAAGTTATCAGTCGACATGTCCAAAACAGATACAGCTGCCGTGGAGGCAA
CCGAAGAGAACTCGAACGAGACGACTTCAGATGCGGCCACCAGTTCATCC
GGTGAAAAGGAGGCTGAGTTCGACAACAAAATCGAGGCTGATCGCAGTAG
GCGCTTTGATTTCCTGCTAAAGCAGACGGAGATATTCACCCACTTCATGA
CTAACAGCGCTAAGAGTCCCACGAAGCCTAAGGGTAGACCCAAGAAGATC
AAAGACAAGGACAAGGAAAAGGATGTGGCCGATCATCGTCATCGCAAGAC
AGAGCAGGAGGAGGATGAGGAGTTGCTGGCGGAAGACTCGGCCACCAAGG
AGATCTTTCGCTTCGATGCCTCACCCGCCTACATCAAAAGTGGAGAGATG
CGTGACTACCAGATTCGCGGTCTTAACTGGATGATTTCGCTTTACGAAAA
TGGTATCAATGGAATTCTGGCCGATGAAATGGGTCTAGGAAAGACCCTGC
AGACCATATCTCTGCTGGGTTACCTCAAGCATTTCAAAAATCAAGCTGGA
CCACACATCGTCATCGTGCCAAAGTCAACGCTTCAGAATTGGGTAAATGA
GTTTAAAAAGTGGTGTCCTTCCCTCAGAGCCGTCTGCCTTATTGGTGACC
AGGACACCCGTAACACCTTCATTAGAGATGTGCTCATGCCTGGCGAGTGG
GACGTTTGCGTGACCTCCTATGAGATGTGTATCCGCGAGAAGTCTGTATT
CAAGAAGTTCAACTGGCGCTATTTGGTCATCGACGAGGCGCATCGTATCA
AGAACGAGAAGTCGAAGCTGTCGGAGATTCTGCGAGAGTTTAAGACCGCT
AATCGTCTACTTATCACGGGTACTCCGCTGCAGAATAACCTCCACGAGCT
GTGGGCCCTGCTTAATTTCCTGCTGCCCGATGTGTTTAATTCGTCAGAGG
ATTTTGACGAATGGTTCAACACGAACACCTGCCTGGGTGACGATGCATTG
ATTACGCGTTTGCATGCCGTGCTGAAACCTTTCCTGCTCCGTCGTCTAAA
GGCCGAAGTGGAGAAGCGTCTGAAGCCGAAGAAGGAGATGAAAATATTTG
TGGGTCTATCCAAGATGCAACGCGACTGGTACACCAAGGTGCTGCTTAAG
GACATTGATGTAGTGAACGGTGCTGGCAAAGTGGAGAAGATGCGACTGCA
GAACATCCTTATGCAGCTCCGCAAGTGCACCAACCACCCATATTTGTTTG
ATGGCGCCGAGCCCGGTCCGCCATACACCACGGACACGCATTTGGTGTAT
AACTCCGGAAAGATGGCTATTCTGGACAAGCTGCTGCCCAAGCTCCAAGA
GCAGGGATCGCGTGTGTTGATTTTCTCACAAATGACGAGGATGTTGGATA
TCCTCGAGGACTACTGTCACTGGCGCAACTACAACTATTGCCGCCTGGAT
GGTCAGACGCCGCACGAAGATCGTAACAGGCAGATTCAGGAATTTAACAT
GGACAACAGCGCCAAGTTTCTCTTCATGTTGTCCACCCGAGCCGGTGGTT
TGGGTATCAATTTGGCTACCGCTGATGTTGTCATCATTTACGACTCGGAT
TGGAATCCTCAAATGGATTTGCAAGCTATGGATCGTGCTCATCGTATTGG
TCAAAAGAAGCAAGTGCGCGTTTTCCGGCTGATCACCGAAAGTACAGTGG
AGGAGAAGATCGTGGAGAGAGCAGAGGTCAAGCTCCGTCTGGACAAGATG
GTCATCCAGGGGGGCAGATTGGTTGACAACCGCTCCAATCAGTTGAACAA
GGATGAAATGCTTAATATAATCCGTTTTGGAGCTAACCAAGTGTTCAGCT
CTAAGGAGACAGACATTACCGATGAGGACATCGATGTTATTTTGGAGCGC
GGTGAGGCCAAGACGGCCGAGCAAAAGGCAGCACTGGACAGTCTGGGCGA
GAGTTCGCTGCGGACGTTCACAATGGACACAAACGGCGAGGCAGGAACTT
CTTCCGTATATCAATTCGAGGGTGAGGATTGGCGCGAGAAGCAAAAGCTA
AATGCGCTGGGCAACTGGATCGAGCCACCGAAGCGTGAACGCAAAGCCAA
CTATGCTGTGGATGCCTATTTCCGCGAGGCTCTCCGTGTCTCCGAACCCA
AGGCACCGAAGGCTCCCCGCCCACCCAAGCAGCCTATCGTTCAGGACTTT
CAGTTCTTCCCACCCCGTCTGTTTGAGCTGCTCGACCAGGAAATCTACTA
TTTCCGCAAGACTGTTGGTTACAAGGTGCCCAAGAACACGGAACTAGGAT
CGGATGCCACCAAAGTGCAGCGCGAGGAGCAGCGCAAGATCGATGAGGCA
GAGCCGCTTACCGAGGAAGAGATCCAGGAGAAGGAGAATCTACTCTCACA
GGGTTTCACTGCCTGGACCAAGCGCGATTTCAACCAGTTCATCAAGGCTA
ACGAAAAGTACGGTCGGGATGATATTGACAACATTGCCAAGGACGTGGAG
GGCAAGACTCCGGAGGAGGTTATCGAGTACAACGCCGTGTTTTGGGAGCG
ATGCACTGAGTTGCAGGATATTGAGCGAATAATGGGACAGATTGAGCGTG
GAGAGGGCAAGATTCAACGGCGATTGTCTATTAAGAAGGCTTTGGATCAA
AAGATGTCGCGGTATCGCGCCCCCTTCCATCAGTTGCGGCTGCAATATGG
TAATAACAAGGGCAAGAATTACACTGAAATAGAGGATCGCTTTCTGGTAT
GCATGCTTCACAAGTTGGGCTTTGACAAGGAGAATGTCTACGAAGAGCTG
CGAGCGGCTATAAGAGCTTCTCCGCAATTCCGCTTTGACTGGTTCATCAA
ATCTAGAACCGCTTTGGAGCTACAGCGTCGCTGCAACACGTTGATTACCC
TTATTGAACGTGAAAACATTGAGCTGGAAGAGAAAGAACGCGCCGAGAAA
AAGAAAAAGGCACCAAAGGGCAGCGTGTCCGCTGGAAGTGGAAGTGCCAG
CTCGAACACTCCAGCACCCGCGCCCCAACCGAAGGCCAGTCAAAAGCGGA
AGAGCGAGGTGGTGGCAACCAGTTCCAACTCGAAAAAGAAGAAGAAGTAA
AAGCTTTCTAGACCAT
BS23195.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:35:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Iswi-RC | 3084 | CG8625-PC | 1..3084 | 17..3100 | 15420 | 100 | Plus |
| Iswi-RB | 3084 | CG8625-PB | 1..3084 | 17..3100 | 15420 | 100 | Plus |
| Iswi-RA | 3084 | CG8625-PA | 1..3084 | 17..3100 | 15420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:35:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Iswi-RC | 3585 | CG8625-RC | 211..3295 | 17..3101 | 15425 | 100 | Plus |
| Iswi-RB | 3541 | CG8625-RB | 167..3251 | 17..3101 | 15425 | 100 | Plus |
| Iswi-RA | 3647 | CG8625-RA | 273..3357 | 17..3101 | 15425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:35:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12637655..12639770 | 538..2653 | 10580 | 100 | Plus |
| 2R | 25286936 | 2R | 12640050..12640338 | 2813..3101 | 1445 | 100 | Plus |
| 2R | 25286936 | 2R | 12637339..12637593 | 283..537 | 1275 | 100 | Plus |
| 2R | 25286936 | 2R | 12637053..12637271 | 64..282 | 1095 | 100 | Plus |
| 2R | 25286936 | 2R | 12639828..12639990 | 2652..2814 | 815 | 100 | Plus |
| 2R | 25286936 | 2R | 12636943..12636990 | 17..64 | 240 | 100 | Plus |
| 3L | 28110227 | 3L | 15971715..15971834 | 1654..1535 | 225 | 79.2 | Minus |
| 3L | 28110227 | 3L | 15972580..15972650 | 928..858 | 190 | 84.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:35:51 has no hits.
BS23195.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:18:26 Download gff for
BS23195.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Iswi-RC | 161..3226 | 17..3082 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:49 Download gff for
BS23195.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Iswi-RA | 273..3338 | 17..3082 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:15 Download gff for
BS23195.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Iswi-RA | 273..3338 | 17..3082 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:15 Download gff for
BS23195.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12640052..12640319 | 2815..3082 | 100 | | Plus |
| 2R | 12636943..12636990 | 17..64 | 100 | -> | Plus |
| 2R | 12637054..12637271 | 65..282 | 100 | -> | Plus |
| 2R | 12637339..12637593 | 283..537 | 100 | -> | Plus |
| 2R | 12637655..12639770 | 538..2653 | 100 | -> | Plus |
| 2R | 12639830..12639990 | 2654..2814 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:49 Download gff for
BS23195.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8527557..8527824 | 2815..3082 | 100 | | Plus |
| arm_2R | 8524448..8524495 | 17..64 | 100 | -> | Plus |
| arm_2R | 8524559..8524776 | 65..282 | 100 | -> | Plus |
| arm_2R | 8524844..8525098 | 283..537 | 100 | -> | Plus |
| arm_2R | 8525160..8527275 | 538..2653 | 100 | -> | Plus |
| arm_2R | 8527335..8527495 | 2654..2814 | 100 | -> | Plus |
BS23195.pep Sequence
Translation from 16 to 3099
> BS23195.pep
MSKTDTAAVEATEENSNETTSDAATSSSGEKEAEFDNKIEADRSRRFDFL
LKQTEIFTHFMTNSAKSPTKPKGRPKKIKDKDKEKDVADHRHRKTEQEED
EELLAEDSATKEIFRFDASPAYIKSGEMRDYQIRGLNWMISLYENGINGI
LADEMGLGKTLQTISLLGYLKHFKNQAGPHIVIVPKSTLQNWVNEFKKWC
PSLRAVCLIGDQDTRNTFIRDVLMPGEWDVCVTSYEMCIREKSVFKKFNW
RYLVIDEAHRIKNEKSKLSEILREFKTANRLLITGTPLQNNLHELWALLN
FLLPDVFNSSEDFDEWFNTNTCLGDDALITRLHAVLKPFLLRRLKAEVEK
RLKPKKEMKIFVGLSKMQRDWYTKVLLKDIDVVNGAGKVEKMRLQNILMQ
LRKCTNHPYLFDGAEPGPPYTTDTHLVYNSGKMAILDKLLPKLQEQGSRV
LIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHEDRNRQIQEFNMDNSAK
FLFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQV
RVFRLITESTVEEKIVERAEVKLRLDKMVIQGGRLVDNRSNQLNKDEMLN
IIRFGANQVFSSKETDITDEDIDVILERGEAKTAEQKAALDSLGESSLRT
FTMDTNGEAGTSSVYQFEGEDWREKQKLNALGNWIEPPKRERKANYAVDA
YFREALRVSEPKAPKAPRPPKQPIVQDFQFFPPRLFELLDQEIYYFRKTV
GYKVPKNTELGSDATKVQREEQRKIDEAEPLTEEEIQEKENLLSQGFTAW
TKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQ
DIERIMGQIERGEGKIQRRLSIKKALDQKMSRYRAPFHQLRLQYGNNKGK
NYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTAL
ELQRRCNTLITLIERENIELEEKERAEKKKKAPKGSVSAGSGSASSNTPA
PAPQPKASQKRKSEVVATSSNSKKKKK*
BS23195.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:14:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Iswi-PC | 1027 | CG8625-PC | 1..1027 | 1..1027 | 5339 | 100 | Plus |
| Iswi-PB | 1027 | CG8625-PB | 1..1027 | 1..1027 | 5339 | 100 | Plus |
| Iswi-PA | 1027 | CG8625-PA | 1..1027 | 1..1027 | 5339 | 100 | Plus |
| brm-PD | 1634 | CG5942-PD | 699..1292 | 74..630 | 1147 | 41.6 | Plus |
| brm-PC | 1634 | CG5942-PC | 699..1292 | 74..630 | 1147 | 41.6 | Plus |
