BS23203.complete Sequence
1238 bp assembled on 2011-01-25
GenBank Submission: KX806292
> BS23203.complete
GAAGTTATCAGTCGACATGGTTGTATCCGTGAAGGTCTTTAAGAAGGCCA
CGCCCAACGGCAAGGTCACCTTTTATCTGGGACGCCGCGACTTCATCGAC
CACATCGACTACTGTGATCCCGTCGATGGAGTGATTGTGGTGGAACCGGA
CTATCTAAAGAACAGGAAAGTCTTTGGCCAACTGGCCACCACCTATCGCT
ATGGTCGCGAGGAGGACGAGGTCATGGGAGTGAAGTTCTCCAAGGAGCTT
ATCCTGTGCCGGGAGCAAATTGTGCCCATGACAAATCCCAACATGGAGAT
GACACCGATGCAGGAGAAGCTGGTCCGCAAACTGGGCAGCAACGCCTATC
CGTTCACCTTCCACTTCCCGCCCAATTCGCCCAGCTCCGTTACTCTGCAG
CAGGAGGGCGACGACAATGGCAAGCCCCTGGGCGTCGAGTACACCATCCG
GGCATTTGTGGGCGACTCCGAGGACGATCGCCAGCACAAGCGGAGCATGG
TCAGTCTGGTGATCAAGAAGCTGCAGTACGCTCCCCTCAATCGTGGCCAG
CGTCTGCCCAGCTCGCTGGTCAGCAAGGGATTCACCTTCTCGAATGGCAA
GATCAGTCTGGAGGTTACGCTGGACAGGGAGATCTACTATCATGGCGAGA
AGACGGCTGCCACCGTCCAGGTGTCGAACAACTCCAAGAAGTCCGTGAAG
AGCATCAAGTGCTTCATTGTGCAGCACACTGAGATCACCATGGTGAACGC
CCAGTTCAGCAAGCATGTGGCCCAGCTGGAGACCAAGGAGGGCTGCCCCA
TCACTCCGGGCGCCAATCTCACCAAGACCTTCTACTTGATTCCGCTGGCG
GCTAACAACAAGGATCGCCATGGTATCGCCCTGGATGGTCACTTGAAGGA
CGAGGATGTCAACCTGGCTTCATCCACCATGGTGCAGGAGGGCAAGTCCA
CGGGAGATGCCTGTGGTATTGTCATCTCGTACTCGGTGCGCATTAAGCTC
AACTGCGGCACTCTGGGAGGTGAAATGCAGACGGATGTGCCCTTCAAGCT
ACTCCAACCGGCACCTGGAACCATTGAGAAGAAGCGCTCGAATGCCATGA
AGAAAATGAAGTCCATCGAGCAGCACCGCAATGTGAAGGGCTATTACCAG
GATGATGACGATAATATTGTATTCGAGGACTTCGCCAAGATGCGCATGAA
CAATGTGAACATGGCGGACTAGAAGCTTTCTAGACCAT
BS23203.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:29:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arr2-RA | 1206 | CG5962-PA | 1..1206 | 17..1222 | 6015 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:29:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arr2-RA | 1547 | CG5962-RA | 112..1317 | 17..1222 | 6015 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:29:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8647967..8648825 | 875..17 | 4280 | 99.9 | Minus |
| 3L | 28110227 | 3L | 8647707..8647903 | 1068..872 | 985 | 100 | Minus |
| 3L | 28110227 | 3L | 8647491..8647646 | 1222..1067 | 780 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:29:08 has no hits.
BS23203.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:28 Download gff for
BS23203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arr2-RA | 112..1317 | 17..1222 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:58:00 Download gff for
BS23203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arr2-RA | 112..1317 | 17..1222 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:25 Download gff for
BS23203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arr2-RA | 112..1317 | 17..1222 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:25 Download gff for
BS23203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8647491..8647645 | 1068..1222 | 100 | <- | Minus |
| 3L | 8647708..8647902 | 873..1067 | 100 | <- | Minus |
| 3L | 8647970..8648825 | 17..872 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:58:00 Download gff for
BS23203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8640808..8641002 | 873..1067 | 100 | <- | Minus |
| arm_3L | 8640591..8640745 | 1068..1222 | 100 | <- | Minus |
| arm_3L | 8641070..8641925 | 17..872 | 99 | | Minus |
BS23203.pep Sequence
Translation from 16 to 1221
> BS23203.pep
MVVSVKVFKKATPNGKVTFYLGRRDFIDHIDYCDPVDGVIVVEPDYLKNR
KVFGQLATTYRYGREEDEVMGVKFSKELILCREQIVPMTNPNMEMTPMQE
KLVRKLGSNAYPFTFHFPPNSPSSVTLQQEGDDNGKPLGVEYTIRAFVGD
SEDDRQHKRSMVSLVIKKLQYAPLNRGQRLPSSLVSKGFTFSNGKISLEV
TLDREIYYHGEKTAATVQVSNNSKKSVKSIKCFIVQHTEITMVNAQFSKH
VAQLETKEGCPITPGANLTKTFYLIPLAANNKDRHGIALDGHLKDEDVNL
ASSTMVQEGKSTGDACGIVISYSVRIKLNCGTLGGEMQTDVPFKLLQPAP
GTIEKKRSNAMKKMKSIEQHRNVKGYYQDDDDNIVFEDFAKMRMNNVNMA
D*
BS23203.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:47:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arr2-PA | 401 | CG5962-PA | 1..401 | 1..401 | 2086 | 100 | Plus |
| Arr1-PB | 364 | CG5711-PB | 1..350 | 1..350 | 898 | 46.9 | Plus |
| Arr1-PA | 364 | CG5711-PA | 1..350 | 1..350 | 898 | 46.9 | Plus |
| krz-PB | 470 | CG1487-PB | 46..463 | 4..394 | 880 | 43.3 | Plus |
| krz-PA | 470 | CG1487-PA | 46..463 | 4..394 | 880 | 43.3 | Plus |
