BS23207.complete Sequence
1010 bp assembled on 2011-01-25
GenBank Submission: KX806207
> BS23207.complete
GAAGTTATCAGTCGACATGCAGCAGAGCACCGGAGCGGCGACGTCATCCG
CAGCAGATAGCGGGATGGGGGCGACGGACCTGGTGTCCAGGTGCGTTGGC
GACGGCGGGGGAGGTGGCGGGAACAGCTGCTCCGGCGGATCCAGCGACCC
AGCAGCGATCAACACAACGATTAGCTCCAAGCAGGCGGATGCGAGGGAGC
CGCAGGAGCAGCAGGTTGCCATCCACTACTTGGCTAGCTTCCATGAACTG
TGCGTGGTGACCGCCCTGCTGCCGCTGGTGACGCTCTTCACGTGCTTCGT
GACCGCCTACGTCTTCCAGTACGACGATGTCCACGAGACACATTGCCGCG
TCTACAACATTATACCCTCGATAAGTGCAATTACCGGCGTCAGTCCGCAG
CGCTACTTCTGGCGCTTCAGCATCGCGCTCCACATCGGACCGCGAATCCC
CATCGCCTTTGTCTACAAGAACTACTACCGCTCGCAGCTGCGTCGGATCA
GTCCCGCCCAGGTGCCTCAGACGAGCCTGCTCATCACGCTGATCCTGGTG
CTCAATTGCATCGAGATCGCGTCCCTGGGCGGCGTCACCTATATATCGAA
TCGCGAGAACTACCCCGTTCACGAGCGCATATTCATCACGTTCATGGTCT
GCTCGCTGTGTTACATGCTGGCCACCATCAAGCTGAACGGCATCCTCAAT
GCCGGACAGGCACTGAGCGAAAAGCAGCTCCTCTCCATCAAGTGGAAGAA
GATCCTGTTCGCCGTCTCCATCCTGAGCACCGTCGGCCTGCTGGTGTTCT
TTGCCAAACATCGCTTCTACTGTCACGACTTGGCATTCAGTTGGTTCGCG
TTCTTCGAGTACTTGATCGCCATTGCCAACATGCTTTTCCACTTCACCAT
CATCTGGGACTTCCCATCGCAGTTCATGATGATCGTGCAGGGACCCCGCG
AGAATCTTGCCCAGTATTTGAGCAACCGGCCGAAACTGGACTAGAAGCTT
TCTAGACCAT
BS23207.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:29:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7990-RA | 978 | CG7990-PA | 1..978 | 17..994 | 4890 | 100 | Plus |
| CG7990-RD | 396 | CG7990-PD | 1..335 | 17..351 | 1675 | 100 | Plus |
| CG7990-RC | 165 | CG7990-PC | 1..141 | 17..157 | 705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:29:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7990-RA | 3079 | CG7990-RA | 177..1155 | 17..995 | 4895 | 100 | Plus |
| CG7990-RC | 3138 | CG7990-RC | 376..1214 | 157..995 | 4195 | 100 | Plus |
| CG7990-RD | 954 | CG7990-RD | 376..710 | 17..351 | 1675 | 100 | Plus |
| CG7990-RC | 3138 | CG7990-RC | 177..317 | 17..157 | 705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:29:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19198517..19198781 | 614..350 | 1325 | 100 | Minus |
| X | 23542271 | X | 19198231..19198449 | 833..615 | 1095 | 100 | Minus |
| X | 23542271 | X | 19199271..19199465 | 351..157 | 975 | 100 | Minus |
| X | 23542271 | X | 19197982..19198144 | 995..833 | 815 | 100 | Minus |
| X | 23542271 | X | 19201464..19201604 | 157..17 | 705 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:29:13 has no hits.
BS23207.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:28 Download gff for
BS23207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7990-RA | 174..1151 | 17..994 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:58:02 Download gff for
BS23207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7990-RA | 174..1151 | 17..994 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:27 Download gff for
BS23207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7990-RA | 177..1154 | 17..994 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:27 Download gff for
BS23207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19197983..19198143 | 834..994 | 100 | <- | Minus |
| X | 19198231..19198449 | 615..833 | 100 | <- | Minus |
| X | 19198517..19198781 | 350..614 | 100 | <- | Minus |
| X | 19199273..19199464 | 158..349 | 100 | <- | Minus |
| X | 19201464..19201604 | 17..157 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:58:02 Download gff for
BS23207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19095497..19095637 | 17..157 | 100 | | Minus |
| arm_X | 19092016..19092176 | 834..994 | 100 | <- | Minus |
| arm_X | 19092264..19092482 | 615..833 | 100 | <- | Minus |
| arm_X | 19092550..19092814 | 350..614 | 100 | <- | Minus |
| arm_X | 19093306..19093497 | 158..349 | 100 | <- | Minus |
BS23207.pep Sequence
Translation from 16 to 993
> BS23207.pep
MQQSTGAATSSAADSGMGATDLVSRCVGDGGGGGGNSCSGGSSDPAAINT
TISSKQADAREPQEQQVAIHYLASFHELCVVTALLPLVTLFTCFVTAYVF
QYDDVHETHCRVYNIIPSISAITGVSPQRYFWRFSIALHIGPRIPIAFVY
KNYYRSQLRRISPAQVPQTSLLITLILVLNCIEIASLGGVTYISNRENYP
VHERIFITFMVCSLCYMLATIKLNGILNAGQALSEKQLLSIKWKKILFAV
SILSTVGLLVFFAKHRFYCHDLAFSWFAFFEYLIAIANMLFHFTIIWDFP
SQFMMIVQGPRENLAQYLSNRPKLD*
BS23207.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:47:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7990-PA | 325 | CG7990-PA | 1..325 | 1..325 | 1690 | 100 | Plus |
| CG7990-PD | 131 | CG7990-PD | 1..117 | 1..117 | 585 | 96.6 | Plus |
| CG3876-PA | 255 | CG3876-PA | 20..237 | 75..299 | 336 | 33.5 | Plus |
| CG7990-PC | 54 | CG7990-PC | 1..47 | 1..47 | 243 | 100 | Plus |
