BS23212.complete Sequence
2897 bp assembled on 2011-02-16
GenBank Submission: KX801269
> BS23212.complete
GAAGTTATCAGTCGACATGTTACACGAGGCTCTGATGCTCGAGATCTACA
GACAGGCGCTAAATGCCGGAGCTCTGCCCACAGCTCGACCACGTTCCACT
GAGTCGGCGAATTCCAGCGAGCGGTGTCCGTCACACGACTCAAACTCCTC
GGAACATGGTGGTGGTGCTGGCAGCGGCGGAGTAGGTCATCGGTTGGACG
CAGCCGCTCTATCAACCGGGGTGATGCCCGGAGAAGGGCCCACCACTCTG
CACTCATCATTTCCAGCAGTTCCGCAGTCCCTGCCCTCCCAGCCGCCCTC
AATGGAGGCGTACCTGCACATGGTGGCAGCAGCCGCTCAGCAGTATGGAT
TCCCTTTGGCCGCTGCTGCAGCGGCTGGGGCGGGTCCACGGCTGCCACTC
CCACTCGCTAATGAGGCGGCGGCTCCATTTAAGCTTCCCCCACAGGCTTC
GCCCACTGCATCGAGTAATAACTCGGAGGCTCTAGACTTTCGCACCAATC
TTTATGGAAGGGCGGAATCGGCTGAGCCACCTGCCTCTGAGGGCGAGGAG
GAGGAATTCGATGACGGTGCCAACAATCCACTCGATCTCTCTGTAGGTAC
CCGGAAACGGGGTCACGAATCGGAGCCTCAACTTGGTCACATTCAGGTTA
AGAAGATGTTCAAGTCAGACAGCCCACCCGCGAATTCCGTGGCTTCACCC
TCAGCCAGTCAACTGCTGCCAGGAGTTAATCCTTATCTTGCCGCTGTGGC
AGCCGCCAATATTTTTCGAGCGGGTCAATTCCCTGACTGGAATAGCAAAA
ATGATTTGGTTGTGGATCCGCTGGAAAAGATGTCTGATATTGTAAAGGGT
GGAGCGAGTGGAATGGGTACCAAGGAAAAAATGCACTCCTCCAAGGCCAC
AACACCACAGGCAGCATCTCAGCCGCCAAAAAGTCCGGTTCAACCAACAC
CCAACCAAAATTCCGAATCCGGAGGAGGGTCCGGAGGCGGTGCTGCTGGT
AGTGGCGCAGTGACCAAAGCGAGGCATAACATTTGGCAATCGCACTGGCA
AAACAAGGGTGTGGCCAGTTCGGTGTTCAGATGTGTGTGGTGCAAGCAGA
GTTTCCCTACCCTGGAAGCCCTGACCACCCACATGAAGGACAGCAAGCAT
TGCGGCGTGAATGTACCACCTTTTGGTAATCTGCCAAGCAACAATCCTCA
GCCGCAGCACCACCATCCAACTCCACCTCCACCGCCGCAGAATCATAACC
TCCGAAAGCATAGTTCAGGAAGCGCTTCCAATCACTCACCATCGGCAAAT
GTCAAGAATGCATTCCAATATCGAGGGGATCCACCCACGCCACTACCACG
AAAATTGGTTAGAGGCCAGAACGTTTGGCTTGGCAAGGGTGTGGAACAGG
CCATGCAGATCCTTAAGTGCATGCGGTGTGGAGAGAGCTTCCGATCTCTT
GGCGAAATGACAAAGCACATGCAGGAGACCCAGCACTACACGAATATCCT
ATCCCAGGAGCAGAGTATATCTATCAAATCAGGGAATGCCAATGCCAACT
CAGATGCCAAGGAGAGCCACAACAGTCTGAGTTCCGAAGAAAGTCGCACT
CTCAGTGCTGTCCTCACATGTAAAGTGTGCGACAAGGCTTTTAATTCTTT
GGGTGATTTAAGCAACCACATGGCCAAGAACAACCACTATGCAGAACCGC
TCCTACAGTCTGCGGGAGCACGAAAGCGACCAGCTCCTAAAAAGCGCGAG
AAGTCCTTGCCAGTACGCAAACTTTTGGAAATGAAGGGCGGATCAGGAAC
GACGCAAGAAGATCATTCAAACGAAAAAACCTCGGTGCAAGGAAAACCAG
GCTTGGGACCTGGTGGAGGCGATAAAAACGATGCTGCCCTTTTTGCCGAA
CGCATGCGACAGTATATTACAGGGGTAAAAGCTCCAGAAGAAATTGCCAA
AGTAGCTGCTGCCCAACTCCTAGCGAAAAACAAGTCCCCAGAGTTAGTGG
AGCAGAAGAACGGCGGCAGCGCAAAGGCTGCCGGTGCCTCGTCTGTTTTA
AGTGCCATTGAGCAGATGTTTACAACCAGCTTTGACACGCCACCCAGACA
CGCCAGCCTGCCAGCTAGTAGTCCATCCAACTCATCCACCAAAAACACTT
CGCCCGTGGCCTCCAGCATACTGAAACGATTGGGGATCGATGAAACTGTG
GACTACAACAAGCCATTGATTGATACCAATGATCCCTATTATCAGCACTA
TAGATATACAAGCAGCGAAAGGAGTGGCAGTGAGTGCAGTGCAGAAGCCA
GGCCTAGATTAGATGCACCGACTCCCGAAAAACAGCAGCAAGGAGGAGGG
CATGACGAGGAATCTTCAAAGCCAGCAATAAAACAAGAAAGGGAAGCGGA
GTCGAAACCTGTTAAAATGGAGATCAAGTCTGAGTTTGTTGATGAGCCAA
ATGAAGCCGAGGAGACATCCAAAATGGAGGCAGCTGTGGTAAATGGAAGT
GCCACCAATAATAACAATAATATTGTGGAAAGGAGTTCCCCAAAAACACC
GTCTTCGGCAGCAAGTCCTCAGACAAGGTTGCTACCTCCCCGAAGCCCTG
CCGAGAGTCAGAGATCAGTTACTCCTAAATCACCCGCTTCGAGCCACAAA
TCGTACGATGGGAGTTCGGAAGGCACAAAGAAGTTTCCAAGTGATTCCCT
CAACGCATTGTCATCTATGTTTGATTCCTTGGGTAGCAGTGGGGCCGGTG
CTAACTCCAGAGCTAAGCTAGCAGCCGCAGCTGCTGCTGGAGGATCAGAA
TCTCCAGAGAACCTCACCGCCGGGGGGAACTCCTTGGCGGCCTTGCGACA
ATTCTGCGTGAAGAAGGAGAAGACCGCCTAAAAGCTTTCTATTTTTT
BS23212.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:36:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tsh-RA | 2865 | CG1374-PA | 1..2865 | 17..2881 | 14310 | 100 | Plus |
| tio-RB | 3075 | CG12630-PB | 1216..1378 | 1352..1514 | 395 | 82.8 | Plus |
| tio-RA | 3075 | CG12630-PA | 1216..1378 | 1352..1514 | 395 | 82.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:36:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tsh-RA | 4732 | CG1374-RA | 1214..4078 | 17..2881 | 14310 | 100 | Plus |
| tio-RB | 5708 | CG12630-RB | 2043..2205 | 1352..1514 | 395 | 82.8 | Plus |
| tio-RA | 5594 | CG12630-RA | 1929..2091 | 1352..1514 | 395 | 82.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:36:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21833370..21836182 | 69..2881 | 14050 | 100 | Plus |
| 2L | 23513712 | 2L | 22021847..22022009 | 1352..1514 | 395 | 82.8 | Plus |
| 2L | 23513712 | 2L | 21829806..21829858 | 17..69 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:36:46 has no hits.
BS23212.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:18:31 Download gff for
BS23212.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tsh-RA | 1217..4074 | 22..2879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:48:18 Download gff for
BS23212.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tsh-RA | 1219..4076 | 22..2879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:39 Download gff for
BS23212.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tsh-RA | 1219..4076 | 22..2879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:39 Download gff for
BS23212.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21829811..21829858 | 22..69 | 100 | -> | Plus |
| 2L | 21833371..21836180 | 70..2879 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:48:18 Download gff for
BS23212.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21829811..21829858 | 22..69 | 100 | -> | Plus |
| arm_2L | 21833371..21836180 | 70..2879 | 99 | | Plus |
BS23212.pep Sequence
Translation from 16 to 2880
> BS23212.pep
MLHEALMLEIYRQALNAGALPTARPRSTESANSSERCPSHDSNSSEHGGG
AGSGGVGHRLDAAALSTGVMPGEGPTTLHSSFPAVPQSLPSQPPSMEAYL
HMVAAAAQQYGFPLAAAAAAGAGPRLPLPLANEAAAPFKLPPQASPTASS
NNSEALDFRTNLYGRAESAEPPASEGEEEEFDDGANNPLDLSVGTRKRGH
ESEPQLGHIQVKKMFKSDSPPANSVASPSASQLLPGVNPYLAAVAAANIF
RAGQFPDWNSKNDLVVDPLEKMSDIVKGGASGMGTKEKMHSSKATTPQAA
SQPPKSPVQPTPNQNSESGGGSGGGAAGSGAVTKARHNIWQSHWQNKGVA
SSVFRCVWCKQSFPTLEALTTHMKDSKHCGVNVPPFGNLPSNNPQPQHHH
PTPPPPPQNHNLRKHSSGSASNHSPSANVKNAFQYRGDPPTPLPRKLVRG
QNVWLGKGVEQAMQILKCMRCGESFRSLGEMTKHMQETQHYTNILSQEQS
ISIKSGNANANSDAKESHNSLSSEESRTLSAVLTCKVCDKAFNSLGDLSN
HMAKNNHYAEPLLQSAGARKRPAPKKREKSLPVRKLLEMKGGSGTTQEDH
SNEKTSVQGKPGLGPGGGDKNDAALFAERMRQYITGVKAPEEIAKVAAAQ
LLAKNKSPELVEQKNGGSAKAAGASSVLSAIEQMFTTSFDTPPRHASLPA
SSPSNSSTKNTSPVASSILKRLGIDETVDYNKPLIDTNDPYYQHYRYTSS
ERSGSECSAEARPRLDAPTPEKQQQGGGHDEESSKPAIKQEREAESKPVK
MEIKSEFVDEPNEAEETSKMEAAVVNGSATNNNNNIVERSSPKTPSSAAS
PQTRLLPPRSPAESQRSVTPKSPASSHKSYDGSSEGTKKFPSDSLNALSS
MFDSLGSSGAGANSRAKLAAAAAAGGSESPENLTAGGNSLAALRQFCVKK
EKTA*
BS23212.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:14:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tsh-PA | 954 | CG1374-PA | 1..954 | 1..954 | 4948 | 100 | Plus |
| tio-PB | 1024 | CG12630-PB | 2..907 | 1..947 | 950 | 32.8 | Plus |
| tio-PA | 1024 | CG12630-PA | 2..907 | 1..947 | 950 | 32.8 | Plus |
