BS23213.complete Sequence
1595 bp assembled on 2011-02-04
GenBank Submission: KX801822
> BS23213.complete
GAAGTTATCAGTCGACATGATGCAAACCCTGAAACCACCGCCACCGCTAC
ATCATCACCACCAGCATCAGCACCAGCTCCAGCATCCGCCTCAGCAGCAG
CCACATCCGCATCAGCAGCTGCAACATCCGTTGCAGCAGCAACAGCACCT
GTCAGCCATGGATAATCACCAGCAACATCAGCCGCATATCCATCAGCAGC
AGCAGCAGCAGCAACAATTGCCACCCACGCCGCAGGCATCTCACCTGGTC
GGTGGGCAGCAACAGCAGCAGCAACATCCGCACCACAATCACCTGGCTGT
CGACCAGGATGACCCAAATCCCGAACTGGTGCTCGCCTTAATTTCCAGGA
ACCGGGCGCTCGAGGCCACAATCCCGAAATGCGGCGGCTGCCACGAGCTG
ATCCTTGACCGCTTCATCCTCAAAGTGCTGGAGAGGACGTGGCACGCCAA
GTGCCTGCAGTGCAGCGAGTGTCATGGCCAGCTGAACGACAAGTGCTTCG
CGCGGAATGGCCAGCTCTTCTGCAAGGAGGACTTCTTCAAGCGTTACGGT
ACAAAGTGTTCCGCTTGTGATATGGGCATTCCGCCCACGCAGGTGGTGCG
TCGGGCGCAGGACAACGTCTACCATCTGCAGTGCTTCCTGTGCGCCATGT
GCTCCCGCACCCTGAACACCGGCGACGAGTTCTACCTGATGGAGGATCGT
AAGCTGATCTGCAAGCGGGACTACGAGGAGGCCAAGGCCAAGGGCCTCTA
TCTGGATGGCTCGTTGGACGGCGATCAGCCGAATAAGCGTCCGCGCACCA
CGATCACCGCCAAGCAGCTGGAGACCCTGAAAACGGCCTACAATAACAGC
CCCAAACCCGCCCGCCATGTACGTGAGCAGCTTTCGCAGGACACGGGCCT
GGACATGCGGGTGGTGCAGGTCTGGTTCCAGAACAGGCGGGCCAAGGAGA
AGCGTCTGAAAAAGGATGCGGGCCGCACGCGCTGGAGCCAGTACTTCCGC
TCGATGAAGGGCAACTGCTCGCCGCGCACCGACAAATTCCTCGACAAGGA
TGAGCTGAAGGTTGACTACGACAGCTTCAGTCACCACGATCTGAGCAACG
ACAGCTACAGCACCGTCAATTTGGGCCTGGATGAGGGCGCCTCGCCGCAC
AGCATCCGCGGATCCTACATGCACGGCAGTTCGAGTCCGTCACAGTATCC
GCCGAGCAGTCGCTCGCCGCCGCCAGTTGGGCAGGGCCACACGTTCGGCT
CCTATCCGGACAACATAGTGTACACCAACATAGATCAAGCGGTCGGGTCT
AGTTTGCATGCCAGTAAGGCGCATCACCGCCTCCACAGTAGCAACAACGT
CTCCGATCTGAGCAACGATTCCAGTCCCGATCAGGGATACCCCGACTTTC
CGCCCAGCCCCGACTCCTGGCTGGGCGATTCGGGCAGCACCAACACGACC
AGCGCCAACAACAATGCGAACAACAACAGCAGCAGCAGCCACAACAACAA
CAACAGTAGTGGCGGGGGAAGCGGCGGGGTGAGCGTCAGTACCGCCCCCA
ATCCGTCGGCGCCCGGCGTACATTACTGAAAGCTTTCTAGACCAT
BS23213.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:19:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lim3-RG | 1668 | CG10699-PG | 1..1563 | 17..1579 | 7800 | 99.9 | Plus |
| Lim3-RF | 1563 | CG10699-PF | 1..1563 | 17..1579 | 7800 | 99.9 | Plus |
| Lim3-RD | 1563 | CG10699-PD | 1..1563 | 17..1579 | 7800 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:19:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lim3-RG | 2712 | CG10699-RG | 205..1767 | 17..1579 | 7800 | 99.9 | Plus |
| Lim3-RF | 3643 | CG10699-RF | 1136..2698 | 17..1579 | 7800 | 99.9 | Plus |
| Lim3-RD | 2712 | CG10699-RD | 205..1767 | 17..1579 | 7800 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:19:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19105723..19106071 | 365..17 | 1745 | 100 | Minus |
| 2L | 23513712 | 2L | 19080201..19080498 | 1579..1282 | 1490 | 100 | Minus |
| 2L | 23513712 | 2L | 19081491..19081693 | 744..542 | 1015 | 100 | Minus |
| 2L | 23513712 | 2L | 19080561..19080756 | 1283..1088 | 980 | 100 | Minus |
| 2L | 23513712 | 2L | 19081229..19081423 | 937..743 | 975 | 100 | Minus |
| 2L | 23513712 | 2L | 19081819..19081995 | 541..365 | 885 | 100 | Minus |
| 2L | 23513712 | 2L | 19081015..19081169 | 1088..934 | 775 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 01:19:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2277..2548 | 22..297 | 405 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6944 | 44..266 | 379 | 65.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6923 | 38..221 | 379 | 68.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6927 | 72..285 | 342 | 66 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2361..2629 | 38..291 | 328 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6900 | 93..282 | 326 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6952 | 29..211 | 276 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2398..2664 | 33..293 | 275 | 59.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2417..2665 | 22..282 | 271 | 59.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6692..6927 | 86..324 | 269 | 59.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2739..2999 | 23..280 | 262 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2523 | 76..293 | 257 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2732..2961 | 55..292 | 243 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2475 | 111..293 | 238 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2722..2919 | 79..278 | 237 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6958 | 23..187 | 224 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6869 | 165..293 | 204 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6707..6839 | 155..293 | 203 | 64 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1144 | 56..151 | 197 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2436 | 165..290 | 195 | 65.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1052..1163 | 63..182 | 176 | 66.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2596..2825 | 60..295 | 169 | 58.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1053..1181 | 88..219 | 168 | 62.2 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3240..3379 | 71..217 | 161 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2596..2798 | 93..295 | 159 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2417 | 191..295 | 154 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1575 | 92..149 | 146 | 72.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1056..1151 | 189..278 | 142 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1593 | 73..158 | 141 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6532..6764 | 64..293 | 140 | 53 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2397 | 199..293 | 134 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2597..2664 | 109..182 | 131 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6806 | 185..293 | 126 | 62.4 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9183..9226 | 165..208 | 121 | 75 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9375..9442 | 141..210 | 120 | 65.7 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7931..7998 | 141..210 | 120 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2385 | 256..293 | 118 | 78.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1096..1133 | 256..293 | 118 | 78.9 | Plus |
BS23213.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:32:55 Download gff for
BS23213.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lim3-RB | 167..1728 | 17..1578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:07 Download gff for
BS23213.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lim3-RD | 205..1766 | 17..1578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:23:18 Download gff for
BS23213.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lim3-RD | 205..1766 | 17..1578 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:23:18 Download gff for
BS23213.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19081820..19081994 | 366..540 | 100 | <- | Minus |
| 2L | 19081015..19081166 | 937..1088 | 100 | <- | Minus |
| 2L | 19080561..19080755 | 1089..1283 | 100 | <- | Minus |
| 2L | 19081230..19081422 | 744..936 | 100 | <- | Minus |
| 2L | 19081492..19081694 | 541..743 | 99 | <- | Minus |
| 2L | 19080202..19080496 | 1284..1578 | 100 | <- | Minus |
| 2L | 19105723..19106071 | 17..365 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:07 Download gff for
BS23213.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19080202..19080496 | 1284..1578 | 100 | <- | Minus |
| arm_2L | 19080561..19080755 | 1089..1283 | 100 | <- | Minus |
| arm_2L | 19081015..19081166 | 937..1088 | 100 | <- | Minus |
| arm_2L | 19081230..19081422 | 744..936 | 100 | <- | Minus |
| arm_2L | 19081492..19081694 | 541..743 | 99 | <- | Minus |
| arm_2L | 19081820..19081994 | 366..540 | 100 | <- | Minus |
| arm_2L | 19105723..19106071 | 17..365 | 100 | | Minus |
BS23213.pep Sequence
Translation from 16 to 1578
> BS23213.pep
MMQTLKPPPPLHHHHQHQHQLQHPPQQQPHPHQQLQHPLQQQQHLSAMDN
HQQHQPHIHQQQQQQQQLPPTPQASHLVGGQQQQQQHPHHNHLAVDQDDP
NPELVLALISRNRALEATIPKCGGCHELILDRFILKVLERTWHAKCLQCS
ECHGQLNDKCFARNGQLFCKEDFFKRYGTKCSACDMGIPPTQVVRRAQDN
VYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKAKGLYLDGSL
DGDQPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQLSQDTGLDMRVV
QVWFQNRRAKEKRLKKDAGRTRWSQYFRSMKGNCSPRTDKFLDKDELKVD
YDSFSHHDLSNDSYSTVNLGLDEGASPHSIRGSYMHGSSSPSQYPPSSRS
PPPVGQGHTFGSYPDNIVYTNIDQAVGSSLHASKAHHRLHSSNNVSDLSN
DSSPDQGYPDFPPSPDSWLGDSGSTNTTSANNNANNNSSSSHNNNNSSGG
GSGGVSVSTAPNPSAPGVHY*
BS23213.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:08:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lim3-PG | 555 | CG10699-PG | 1..520 | 1..520 | 2858 | 100 | Plus |
| Lim3-PF | 520 | CG10699-PF | 1..520 | 1..520 | 2858 | 100 | Plus |
| Lim3-PD | 520 | CG10699-PD | 1..520 | 1..520 | 2858 | 100 | Plus |
| Lim3-PC | 520 | CG10699-PC | 1..520 | 1..520 | 2858 | 100 | Plus |
| Lim3-PB | 520 | CG10699-PB | 1..520 | 1..520 | 2858 | 100 | Plus |
