BS23218.complete Sequence
1013 bp assembled on 2011-01-25
GenBank Submission: KX802820
> BS23218.complete
GAAGTTATCAGTCGACATGCTAGCGGTGAACCAGACGAAGAACACCCTAC
TCGATGGAGCCTCCATTGAGGAAGAGCCGTACACAACTCCGCAGGAAAGC
GAGGATTTCTTTGAGAGTCTAGACAAACCGTCGAGGGAGCCAACACAACT
GGCACCCAGAAACACCTTCATCCGCGCCGGTGTGTTGACCACAGTGAGAG
GTTCCGCCTACATGGAGTATGGTAACACCAAGGTTCTGGCCATTGTGGCC
CCGCCAAAGGAGCTAATCCGCGCCAGCGCACGCAGAATGAACATGGGTGT
TCTGAATTGCTATGTGAATTTTGCGGCCTTCAGCACAGGGGATCTAGATT
CGGTGCCGGAACGGGAACGCCACCTGAGCAGCATGCTGACCAAGGCCATG
GAGCCGGTGGTGTGCCGCACGGAGTTCCTTAACTTTCAGCTGGACATACG
GGTGCTTATTCTCGACGATGACGGCTGCCTGCTCAGCACTGCCATCAATT
GCTGCGGAGTCGCTTTGGTGGAGTGCGGCATTTCCACTTACGACTTAATT
ACGGCCTCCACAGCTTGTATCTATCGGGATCACGTCTTCCTGAATCCCAG
TGCCAAGGTTGAGGAGCTGCTCTGGAAGCATCGCAACAGCAGCACCGATA
GCACAACCAGCCCATCATCCGCCCAGGAGCACGGCCTGATCATTACCGCC
AGCATGGATACCTTTGAACAGATCGCCCAGTGCCAGCAGTGCGGATATCT
CAGTCCAGCCACCTATGTAAAGCTGCTGGATTACACCCTGGCCATTAACA
AGTCCCTGAGAGAACTAGTCAAAGGCGTGCTCACGAAGCGGGTGAAGGAG
CAGCACGAACTAGATCTACGCGAGAAAGCCGAGACCGCTCTAGAAGATCA
GCGTTTGGAGGAAATAATCGAGAAGCTAAAGAAGCAAGGACCAGAGGAGT
TTATACAATCGAACATCCGGGAGGATCCCTATGTAAAGAGGCAGTAGAAG
CTTTCTAGACCAT
BS23218.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:29:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mtr3-RA | 981 | CG8025-PA | 1..981 | 17..997 | 4905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:29:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mtr3-RA | 1253 | CG8025-RA | 87..1067 | 17..997 | 4905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:29:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19912591..19913420 | 997..168 | 4150 | 100 | Minus |
| 3L | 28110227 | 3L | 19913479..19913629 | 167..17 | 755 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:29:18 has no hits.
BS23218.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:29 Download gff for
BS23218.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mtr3-RA | 70..1050 | 17..997 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:58:04 Download gff for
BS23218.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mtr3-RA | 87..1067 | 17..997 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:30 Download gff for
BS23218.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mtr3-RA | 87..1067 | 17..997 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:30 Download gff for
BS23218.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19912591..19913420 | 168..997 | 100 | <- | Minus |
| 3L | 19913479..19913629 | 17..167 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:58:04 Download gff for
BS23218.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19905691..19906520 | 168..997 | 100 | <- | Minus |
| arm_3L | 19906579..19906729 | 17..167 | 100 | | Minus |
BS23218.pep Sequence
Translation from 16 to 996
> BS23218.pep
MLAVNQTKNTLLDGASIEEEPYTTPQESEDFFESLDKPSREPTQLAPRNT
FIRAGVLTTVRGSAYMEYGNTKVLAIVAPPKELIRASARRMNMGVLNCYV
NFAAFSTGDLDSVPERERHLSSMLTKAMEPVVCRTEFLNFQLDIRVLILD
DDGCLLSTAINCCGVALVECGISTYDLITASTACIYRDHVFLNPSAKVEE
LLWKHRNSSTDSTTSPSSAQEHGLIITASMDTFEQIAQCQQCGYLSPATY
VKLLDYTLAINKSLRELVKGVLTKRVKEQHELDLREKAETALEDQRLEEI
IEKLKKQGPEEFIQSNIREDPYVKRQ*
BS23218.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:47:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mtr3-PA | 326 | CG8025-PA | 1..326 | 1..326 | 1666 | 100 | Plus |
| Ski6-PB | 246 | CG15481-PB | 11..176 | 33..201 | 191 | 31.4 | Plus |
| Ski6-PA | 246 | CG15481-PA | 11..176 | 33..201 | 191 | 31.4 | Plus |
