BS23220.complete Sequence
500 bp assembled on 2011-01-25
GenBank Submission: KX801262
> BS23220.complete
GAAGTTATCAGTCGACATGGATAACATTGACGAAGACCTGACCCCCGAGC
AGATTGCCGTTCTGCAGAAGGCATTCAACAGCTTCGACCACCAGAAGACC
GGCAGTATCCCCACCGAAATGGTGGCCGATATCCTCCGTCTTATGGGTCA
GCCCTTCGACAGGCAGATCCTTGACGAGCTGATCGACGAGGTCGATGAGG
ACAAATCCGGTCGCCTGGAGTTCGAGGAGTTCGTCCAGCTGGCTGCCAAG
TTCATCGTAGAGGAGGATGATGAGGCCATGCAGAAGGAGCTGCGCGAGGC
TTTCCGTCTGTACGACAAGCAGGGCAATGGCTACATTCCCACCTCCTGCC
TGAAGGAGATCCTCAAGGAACTGGACGACCAGCTGACCGAACAGGAGCTC
GACATCATGATTGAGGAAATCGATTCCGACGGCTCTGGCACCGTTGATTT
TGATGAATTCATGGAGATGATGACTGGCGAGTAAAAGCTTTCTAGACCAT
BS23220.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:29:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TpnC47D-RB | 468 | CG9073-PB | 1..468 | 17..484 | 2340 | 100 | Plus |
TpnC47D-RA | 468 | CG9073-PA | 1..468 | 17..484 | 2340 | 100 | Plus |
TpnC73F-RC | 468 | CG7930-PC | 16..468 | 32..484 | 1530 | 89.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:29:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TpnC47D-RB | 791 | CG9073-RB | 55..522 | 17..484 | 2340 | 100 | Plus |
TpnC47D-RA | 601 | CG9073-RA | 55..522 | 17..484 | 2340 | 100 | Plus |
TpnC73F-RC | 1059 | CG7930-RC | 210..663 | 32..485 | 1535 | 89.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:29:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11274580..11274831 | 455..204 | 1260 | 100 | Minus |
3L | 28110227 | 3L | 17047352..17047601 | 206..455 | 905 | 90.8 | Plus |
2R | 25286936 | 2R | 11274890..11275064 | 203..29 | 875 | 100 | Minus |
3L | 28110227 | 3L | 17046344..17046460 | 32..148 | 300 | 83.8 | Plus |
3L | 28110227 | 3L | 17046522..17046579 | 146..203 | 200 | 89.7 | Plus |
2L | 23513712 | 2L | 5218651..5218773 | 242..364 | 195 | 77.2 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:29:22 has no hits.
BS23220.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:30 Download gff for
BS23220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TpnC47D-RA | 60..525 | 17..482 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:58:05 Download gff for
BS23220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TpnC47D-RA | 55..520 | 17..482 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:31 Download gff for
BS23220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TpnC47D-RA | 55..520 | 17..482 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:31 Download gff for
BS23220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11274116..11274142 | 456..482 | 100 | <- | Minus |
2R | 11274580..11274831 | 204..455 | 100 | <- | Minus |
2R | 11274890..11275064 | 29..203 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:58:05 Download gff for
BS23220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7161621..7161647 | 456..482 | 100 | <- | Minus |
arm_2R | 7162085..7162336 | 204..455 | 100 | <- | Minus |
arm_2R | 7162395..7162569 | 29..203 | 100 | <- | Minus |
BS23220.pep Sequence
Translation from 16 to 483
> BS23220.pep
MDNIDEDLTPEQIAVLQKAFNSFDHQKTGSIPTEMVADILRLMGQPFDRQ
ILDELIDEVDEDKSGRLEFEEFVQLAAKFIVEEDDEAMQKELREAFRLYD
KQGNGYIPTSCLKEILKELDDQLTEQELDIMIEEIDSDGSGTVDFDEFME
MMTGE*
BS23220.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:47:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TpnC47D-PB | 155 | CG9073-PB | 1..155 | 1..155 | 788 | 100 | Plus |
TpnC47D-PA | 155 | CG9073-PA | 1..155 | 1..155 | 788 | 100 | Plus |
TpnC73F-PC | 155 | CG7930-PC | 1..155 | 1..155 | 739 | 92.9 | Plus |
TpnC73F-PA | 155 | CG7930-PA | 1..155 | 1..155 | 739 | 92.9 | Plus |
TpnC41C-PB | 154 | CG2981-PB | 1..151 | 4..154 | 498 | 64.2 | Plus |