BS23235.complete Sequence
551 bp assembled on 2011-01-25
GenBank Submission: KX802094
> BS23235.complete
GAAGTTATCAGTCGACATGAAGCTCCTGATGCTCGGCACAATTTTGGCAT
TCTTTTCTGTAATCTCGGCGACAATGGCGGCTAACAAGGAGAGGACTTTC
ATCATGGTCAAGCCCGATGGCGTCCAGCGCGGGCTCGTCGGCAAGATCAT
CGAGCGCTTCGAGCAGAAGGGCTTCAAGCTGGTCGCCCTGAAGTTCACCT
GGGCCTCCAAGGAGCTGCTGGAGAAGCACTACGCTGATCTGTCCGCCCGC
CCCTTCTTCCCCGGACTCGTGAACTACATGAACTCCGGCCCCGTGGTGCC
CATGGTGTGGGAGGGTCTGAATGTGGTCAAGACCGGTCGCCAGATGCTCG
GCGCCACCAACCCCGCCGACTCGCTGCCCGGCACCATCCGCGGTGACTTC
TGCATTCAGGTCGGACGCAACATCATCCACGGCTCCGATGCCGTCGAGTC
TGCCGAGAAGGAGATCGCCCTGTGGTTCAACGAAAAGGAGCTGGTCACCT
GGACCCCGGCCGCCAAGGACTGGATCTACGAATAGAAGCTTTCTAGACCA
T
BS23235.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:29:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| awd-RD | 507 | CG2210-PD | 1..507 | 29..535 | 2535 | 100 | Plus |
| awd-RC | 507 | CG2210-PC | 1..507 | 29..535 | 2535 | 100 | Plus |
| awd-RE | 462 | CG2210-PE | 1..462 | 74..535 | 2310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:29:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| awd-RD | 727 | CG2210-RD | 121..642 | 15..536 | 2610 | 100 | Plus |
| awd-RC | 634 | CG2210-RC | 28..549 | 15..536 | 2610 | 100 | Plus |
| awd-RE | 578 | CG2210-RE | 1..493 | 44..536 | 2465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:29:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31745257..31745591 | 536..202 | 1675 | 100 | Minus |
| 3R | 32079331 | 3R | 31745769..31745957 | 203..15 | 945 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:29:28 has no hits.
BS23235.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:30 Download gff for
BS23235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| awd-RA | 30..548 | 17..535 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:58:07 Download gff for
BS23235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| awd-RC | 30..548 | 17..535 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:34 Download gff for
BS23235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| awd-RC | 30..548 | 17..535 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:34 Download gff for
BS23235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31745770..31745955 | 17..202 | 100 | | Minus |
| 3R | 31745258..31745590 | 203..535 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:58:07 Download gff for
BS23235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27570980..27571312 | 203..535 | 100 | <- | Minus |
| arm_3R | 27571492..27571677 | 17..202 | 100 | | Minus |
BS23235.pep Sequence
Translation from 16 to 534
> BS23235.pep
MKLLMLGTILAFFSVISATMAANKERTFIMVKPDGVQRGLVGKIIERFEQ
KGFKLVALKFTWASKELLEKHYADLSARPFFPGLVNYMNSGPVVPMVWEG
LNVVKTGRQMLGATNPADSLPGTIRGDFCIQVGRNIIHGSDAVESAEKEI
ALWFNEKELVTWTPAAKDWIYE*
BS23235.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:47:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| awd-PD | 168 | CG2210-PD | 1..168 | 5..172 | 877 | 100 | Plus |
| awd-PC | 168 | CG2210-PC | 1..168 | 5..172 | 877 | 100 | Plus |
| awd-PE | 153 | CG2210-PE | 1..153 | 20..172 | 808 | 100 | Plus |
| nmdyn-D6-PA | 151 | CG5310-PA | 2..147 | 25..167 | 156 | 29.5 | Plus |
