Clone BS23236 Report

Search the DGRC for BS23236

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:232
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptCG9590-RA
Protein status:BS23236.pep: full length peptide match
Sequenced Size:1415

Clone Sequence Records

BS23236.complete Sequence

1415 bp assembled on 2011-01-25

GenBank Submission: KX804544

> BS23236.complete
GAAGTTATCAGTCCCCATGGCAAAAAATCCAAAAAAGGAGGAGGACGGCG
GTAACGACTGGGCCCAAAGTGACGAGGACGACAACTGGGACGATTGGGGC
GATGACGATGACAAGTTCGTTCACGTGGAGAAGGAACAGCAGCCACAGGA
GAAAGTCTCGAGCAGAAACGACGCAAAAGGAACGGCGGAAAATCAGGAAA
AGCTGGAAACTCCCAGAATTTCTGCTCCAGCAACAGCATCCGCCACATCC
TCGTCCTGGGGTCTGTGGGGCGGTAAACTGAGCTCCGTGCTAACCACCGC
CACGGAGGGATTGGGCACGATAACCACCCAAGTCAACCAGGGGCTTAATC
AAATCATCGGAGTGCCCGATCCCGAGGAGCTGGCTCGCATTAATGTGGCT
GAAAAGGCGGAAAAGGCTGCTAAAGCGCCGCCAGAGGAAAATGTCGACGA
TGAAAAAGAATCTTCGGCCGCCTTTGGCTTGGACTTTGTCACCAATCTGG
GCTCCAAGGTTCTCAACACCGGACTGGATACACTCGAGGGCATTGGCAAG
AAGACCATGACCATCCTGCAAGACAACGATCCCAAGCTGATGAACAAGAG
GAAACTGCTCGGTCTGGAGGCCAACTCGCCTAATTTGAGTGCCGTGTTGC
TGGAGGCAAAGAAGGAGGCCGACCAAATGGAGCAATCCCTGCAACAGCTA
CAGCTGAAAAGACAGAAGGCGCAGCTGCGTTTCGAAATCCTTTTCGAAAA
TTACTGCGGCCTGGTGCACTTCGAGGCCCTGGAGATCCTTTCCAAGGAGT
CACGCCTCAAACTGGACACCCTACTCGATGCGGTTAGTGGCAATGCCCGT
GCAGAGTTGCAGGAAACGATAAACGAGGTGAAGGAACTGATCGAACTGGA
GGATCTGGATGTGGAGAGTGAAGGTGACTACGAGGCGGAGGAACTGAGCG
AGCGATTGGCGGCCACAATCAAGGACGCCGAGCTGGGCATTCAGTTTGAC
GACATAGCCAATCACTGGACACAGTCCCTCAGCTGGTTGACCTCAGAGGA
AGCAACTGCCGCCGATCTGGAGCAAGCCTATGCTAAGAGCATCCACGCGC
TGAGTGAAGCGTGCGCCCTCGAGATGTGTAAGCTGCACAAAATCGCCGAG
CTGTTGCTGGTGAAGCCACATCACAGCACCGCCAACGAAGTGGATGGCGT
CGTCAATCTCTGCCAGCAGTTCAATGGACACCTTCAAGGACTTAGCCACC
GCTTCGCCGCCGTTCTGAGCGGCAAGTCAGAAACGGAGGAATCAAAAGGC
CGGGTCAGCACATTCTTTTCCGAAATGCTATCTGCCGTGCAGTTCATCGA
GAAGGCCTACAAGCTATTTACACCCATTCTCCAGATGGGAGCTGTGTAAA
AGCTTTCTAGACCAT

BS23236.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:29:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG9590-RA 1383 CG9590-PA 1..1383 17..1399 6885 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG9590-RA 1578 CG9590-RA 62..1445 17..1400 6890 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:29:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15786764..15787758 17..1011 4960 99.9 Plus
3R 32079331 3R 15787818..15788206 1012..1400 1930 99.7 Plus
Blast to na_te.dros performed on 2014-11-26 16:29:32 has no hits.

BS23236.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:31 Download gff for BS23236.complete
Subject Subject Range Query Range Percent Splice Strand
CG9590-RA 64..1444 17..1397 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:58:10 Download gff for BS23236.complete
Subject Subject Range Query Range Percent Splice Strand
CG9590-RA 62..1442 17..1397 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:35 Download gff for BS23236.complete
Subject Subject Range Query Range Percent Splice Strand
CG9590-RA 62..1442 17..1397 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:35 Download gff for BS23236.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15786764..15787758 17..1011 99 -> Plus
3R 15787818..15788203 1012..1397 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:58:10 Download gff for BS23236.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11613540..11613925 1012..1397 99   Plus
arm_3R 11612486..11613480 17..1011 99 -> Plus

BS23236.pep Sequence

Translation from 16 to 1398

> BS23236.pep
MAKNPKKEEDGGNDWAQSDEDDNWDDWGDDDDKFVHVEKEQQPQEKVSSR
NDAKGTAENQEKLETPRISAPATASATSSSWGLWGGKLSSVLTTATEGLG
TITTQVNQGLNQIIGVPDPEELARINVAEKAEKAAKAPPEENVDDEKESS
AAFGLDFVTNLGSKVLNTGLDTLEGIGKKTMTILQDNDPKLMNKRKLLGL
EANSPNLSAVLLEAKKEADQMEQSLQQLQLKRQKAQLRFEILFENYCGLV
HFEALEILSKESRLKLDTLLDAVSGNARAELQETINEVKELIELEDLDVE
SEGDYEAEELSERLAATIKDAELGIQFDDIANHWTQSLSWLTSEEATAAD
LEQAYAKSIHALSEACALEMCKLHKIAELLLVKPHHSTANEVDGVVNLCQ
QFNGHLQGLSHRFAAVLSGKSETEESKGRVSTFFSEMLSAVQFIEKAYKL
FTPILQMGAV*

BS23236.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:47:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG9590-PA 460 CG9590-PA 1..460 1..460 2333 100 Plus