BS23247.complete Sequence
866 bp assembled on 2011-01-25
GenBank Submission: KX804448
> BS23247.complete
GAAGTTATCAGTCGACATGCCACCCAAAAAGCCAACCGAGAAATCCGCCA
AGCCTGGCGACAAGAAGCCAGAGCAGAAGAAGACTGCTGCGGCTCCCGCT
GCCGGCAAGAAGGAGGCTGCTCCCTCGGCTGCCAAGCCAGCTGCCGCTGC
GCCCAAGAAGGCTGCTGCCCCAGCGGCTAAGAAGGCTGCTCCGGCCGCCA
AGAAGCCAGCGACCGCCGGTGCTGCTGCCAAGAAGCCCGCGGCCGTAAAG
ACGACCGCGGCCGCCAAGGCCAAGAGCAAGGATGCCAAGAAGAAGGTCCT
CGCCGGCAAGAAGCCCCAGTCCGTGCTGGCCAAGCTCTCTGCCAAGGCTC
GCGCGGCCGCCAAGGCCAAGAAGGGCGTGAAGCCCGTGACCAAGCCCGCC
AAGGGAACCGCCAAGGCCAAGGCTGTGGCTCTGCTGAACGCCAAGAAGGT
CCAGAAGAAGATCATCAAGGGCGCCTTCGGCACCCGTGCCCGCAAGATCC
GCACCAACGTGCACTTCCGTCGGCCAACCACCCTGAAGCTGCCCAGGAGT
CCCAAGTACCCCAGGAAATCGGTGCCCACCAGGAACCGCATGGACGCGTA
CAACATCATCAAGTACCCACTGACCACCGAGGCGGCCATGAAGAAGATCG
AGGACAACAACACCCTGGTCTTCCTCACACACCTGCGCGCCAACAAGAAC
CACGTGCGTGCCGCAGTGCGCAAGCTCTACGACATCAAGGTGGCCAAGGT
GAACGTGCTCATCCGGCCCGATGGCCAGAAGAAGGCCTATGTGCGCCTGG
CGCGCGACTACGACGCCCTGGACATTGCCAACAAGATCGGCATCATATAA
AAGCTTTCTAGACCAT
BS23247.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:29:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL23A-RA | 834 | CG7977-PA | 1..834 | 17..850 | 4170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:29:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL23A-RA | 1016 | CG7977-RA | 29..862 | 17..850 | 4170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:29:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1667809..1668222 | 460..47 | 2070 | 100 | Minus |
| 3L | 28110227 | 3L | 1667346..1667737 | 850..459 | 1960 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 16:29:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 650..750 | 116..222 | 126 | 59.8 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 647..753 | 161..267 | 112 | 56.1 | Plus |
BS23247.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:32 Download gff for
BS23247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL23A-RA | 52..883 | 17..848 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:58:12 Download gff for
BS23247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL23A-RA | 29..860 | 17..848 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:37 Download gff for
BS23247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL23A-RA | 29..860 | 17..848 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:37 Download gff for
BS23247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1667809..1668221 | 48..460 | 100 | <- | Minus |
| 3L | 1668596..1668626 | 17..47 | 100 | | Minus |
| 3L | 1667348..1667735 | 461..848 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:58:12 Download gff for
BS23247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1667348..1667735 | 461..848 | 100 | <- | Minus |
| arm_3L | 1667809..1668221 | 48..460 | 100 | <- | Minus |
| arm_3L | 1668596..1668626 | 17..47 | 100 | | Minus |
BS23247.pep Sequence
Translation from 16 to 849
> BS23247.pep
MPPKKPTEKSAKPGDKKPEQKKTAAAPAAGKKEAAPSAAKPAAAAPKKAA
APAAKKAAPAAKKPATAGAAAKKPAAVKTTAAAKAKSKDAKKKVLAGKKP
QSVLAKLSAKARAAAKAKKGVKPVTKPAKGTAKAKAVALLNAKKVQKKII
KGAFGTRARKIRTNVHFRRPTTLKLPRSPKYPRKSVPTRNRMDAYNIIKY
PLTTEAAMKKIEDNNTLVFLTHLRANKNHVRAAVRKLYDIKVAKVNVLIR
PDGQKKAYVRLARDYDALDIANKIGII*
BS23247.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:47:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL23A-PA | 277 | CG7977-PA | 1..277 | 1..277 | 1372 | 100 | Plus |
| RpL22-PA | 299 | CG7434-PA | 3..189 | 2..161 | 180 | 38 | Plus |
| RpL22-PA | 299 | CG7434-PA | 64..241 | 5..175 | 157 | 36.2 | Plus |
