BS23253.complete Sequence
1058 bp assembled on 2011-01-25
GenBank Submission: KX803647
> BS23253.complete
GAAGTTATCAGTCGACATGAAGACATTCCTGATTTTGGCATTCTTTGCTC
TGGCCGCCTCGGCTATTCCGATCAAGGAATCTGAGCGCGTCCATGGGGAG
AACGGCTGGTACGTTCCCCAGGAGGATGGCACTTCCGAGTGGGTGGACAT
GGACGTTGCCGAACAGTGGATGGAAGCCCAAGAGTTGCTGGAAAGTCGTG
GCTTGACCACCGTTCCCGTAAAGTTCTACCTTTACACCTCCTCCAACCCC
ACCAAGGGCAAGAAGATCACCGCCTCCACCAAGTCCATTGATGCCTCCAG
CTTTAACTCCGCCCATCCAACTCGCTTTGTGATCCACGGCTGGACCCAGA
GCTACACCGCCAGCATGAACAAGGACATCCGCAGTGCCTGGCTCTCCAGA
GGAGACTACAACGTGATCGTCGTCGACTGGGCCCGTGCTCGTTCCGTGGA
TTACGCGACTTCTGTTTTGGCTGTCGCTGCCACCGGAAAGAAGGTTGCCA
AGATGATCAACTTCCTGAAGGACAACCACGGTCTGAATTTGAACGATTTG
TACGTGATTGGTCACAGCCTGGGCGCCCATGTGGCTGGATATGCCGGCAA
GAACACCGACGGCCAGGTGCACACCATCATTGGTCTGGACCCCGCCCTGC
CCCTCTTCAGCTACAACAAGCCCAACAAGCGTCTGAATTCCGACGATGCC
TGGTATGTGGAGTCCATCCAGACCAATGGTGGCACTCTGGGATTCCTGAA
GCCCATCGGCAAGGGAGCTTTCTACCCCAACGGAGGAAAGACCCAGCCCG
GATGCGGATTGGACCTGACTGGCGCCTGCTCCCACGGACGCTCTACAACC
TACTACGCCGAGGCCGTCTCCGAGGACAACTTCGGAACCATGAAGTGCGG
AGACTACGAGGAAGCCGTTTCCAAGGAATGCGGAAGCACCTACTCCAGCG
TTCGCATGGGAGCTGATACCAATGCCTACATGGTCGAGGGTGACTACTAT
GTGCCCGTAAACAGCAAGGCTCCCTTCGGCATGATTAACTAAAAGCTTTC
TAGACCAT
BS23253.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:29:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6277-RA | 1026 | CG6277-PA | 1..1026 | 17..1042 | 5130 | 100 | Plus |
| CG6271-RA | 1026 | CG6271-PA | 1..1026 | 17..1042 | 3375 | 88.6 | Plus |
| CG6283-RA | 1020 | CG6283-PA | 298..1014 | 323..1036 | 1435 | 80.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:29:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6277-RA | 1085 | CG6277-RA | 31..1056 | 17..1042 | 5130 | 100 | Plus |
| CG6271-RA | 1072 | CG6271-RA | 22..1047 | 17..1042 | 3375 | 88.6 | Plus |
| CG6283-RA | 1083 | CG6283-RA | 323..1039 | 323..1036 | 1435 | 80.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:29:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27022100..27023086 | 1042..56 | 4935 | 100 | Minus |
| 3R | 32079331 | 3R | 27024993..27025960 | 1042..75 | 3250 | 89 | Minus |
| 3R | 32079331 | 3R | 27020282..27020998 | 1036..323 | 1435 | 80.3 | Minus |
| 3R | 32079331 | 3R | 27005957..27006583 | 1033..410 | 1045 | 78.1 | Minus |
| 3R | 32079331 | 3R | 27018673..27019142 | 1029..563 | 515 | 74.5 | Minus |
| 3R | 32079331 | 3R | 27017226..27017623 | 1029..632 | 385 | 73.1 | Minus |
| 3R | 32079331 | 3R | 27023148..27023187 | 56..17 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:29:56 has no hits.
BS23253.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:34 Download gff for
BS23253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6277-RA | 26..1049 | 17..1040 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:58:20 Download gff for
BS23253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6277-RA | 31..1054 | 17..1040 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:44 Download gff for
BS23253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6277-RA | 31..1054 | 17..1040 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:44 Download gff for
BS23253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27023148..27023187 | 17..56 | 100 | | Minus |
| 3R | 27022102..27023085 | 57..1040 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:58:20 Download gff for
BS23253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22847824..22848807 | 57..1040 | 100 | <- | Minus |
| arm_3R | 22848870..22848909 | 17..56 | 100 | | Minus |
BS23253.pep Sequence
Translation from 16 to 1041
> BS23253.pep
MKTFLILAFFALAASAIPIKESERVHGENGWYVPQEDGTSEWVDMDVAEQ
WMEAQELLESRGLTTVPVKFYLYTSSNPTKGKKITASTKSIDASSFNSAH
PTRFVIHGWTQSYTASMNKDIRSAWLSRGDYNVIVVDWARARSVDYATSV
LAVAATGKKVAKMINFLKDNHGLNLNDLYVIGHSLGAHVAGYAGKNTDGQ
VHTIIGLDPALPLFSYNKPNKRLNSDDAWYVESIQTNGGTLGFLKPIGKG
AFYPNGGKTQPGCGLDLTGACSHGRSTTYYAEAVSEDNFGTMKCGDYEEA
VSKECGSTYSSVRMGADTNAYMVEGDYYVPVNSKAPFGMIN*
BS23253.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:48:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6277-PA | 341 | CG6277-PA | 1..341 | 1..341 | 1809 | 100 | Plus |
| CG6271-PA | 341 | CG6271-PA | 1..341 | 1..341 | 1626 | 88.9 | Plus |
| CG6283-PA | 339 | CG6283-PA | 1..338 | 1..340 | 1225 | 68.6 | Plus |
| CG6295-PA | 338 | CG6295-PA | 2..338 | 1..341 | 1219 | 66.7 | Plus |
| CG17191-PA | 337 | CG17191-PA | 1..336 | 1..340 | 1128 | 62.5 | Plus |
