BS23258.complete Sequence
1712 bp assembled on 2011-01-25
GenBank Submission: KX805129
> BS23258.complete
GAAGTTATCAGTCGACATGGATGATGGAGGGGAGTTGAGCTTGGTGAAGA
AAGTTGTCCACTCGCTGGTGGTGTCCTCACCAGGAAAACTGACCGTTGAG
CAGTTGATGCGGGATTACCGCAGCGAAGAGGGCTGCACTTTGCCCTACAG
CAAACTGGGATTTAAGGACGCCGAATCCTTTCTCCGATCCATTCCGGATA
CGGTTACGGTGACGGGCCACGGACAAATGGCATGGATAACTGCAGTAGCC
ACTGCCAAATCGGCGCACATTCAGAAATTGGTCCGTTGCCAAAAGAAGTC
CAAGAATCGAGGCTCCCACAAACCCAAGTATTGCTACGCCTCCGAGCCAT
CCAATCTGGTCTTCATTAACGAAAGCGTCTCTAAAATGAAAAACAGAAAA
GCGCCGTTCCCAACTTATCAGGTGCCCAGAAATCTGAAACTTCCTGTATC
ATATCCCAACTATAATCGACTGTTATATCCCGTCCATACGCCTCATATTG
ACCAAATGATCAGCACCGGACAGCAACAGAGTACCCTTAGAACCCAAAGG
CCAAGCTTTCCATGTAACGCCAACTCCAAGTCATTGAAAGTTAATGATTG
GTCGCAGAAAGACCGAAAACAGGAACCCTCAAAGGAGCGAAACAATCAGA
AATATCCTAAAATAACTACTGAGAATAAGCAAGAGAAAGAAACCGAGGAA
TTGGCCCAAGCTTTTGAAAACCTTTCCGTGGATGTTGCTCCCACTGATCA
CCAAGAAAAGCTAAAGTGCGAAATATATGAGGATAATGAGGACGAATTCG
TGAGAGACCCCTTTATCTATGGAGAGGTTAAAGAGAAAGAAGATGAAGCC
GTGGTGCTCGCATTTGACGCCGTTTCCGAGGATGGTTTTGATCTCTTATC
GATGACCACAACTCAACAGAATGCTGTCAAGCCCCTGGATCCGCCGGAGG
ATTGCTTACACTACGCGTCTTCTGACGATGGGGAAGATGAAAATGCCATT
CCAGCTTATGCTGTGGACCATCGAGTTCTGGACGTGGACTACCCTAGGGA
TGCGGTTCGTTCTGCTTTCACACTGCCTGCTCGCGATATTGAATCCATTA
TCGAATTACAGCAGCGCATTAGGGTGCAGTTGGTGAGTTTGGTCAATCCA
CACAATTTTAACTTCTGGATATATAACGATGACTTTAAAGACTACGAGGC
ACAGTTTGCCAATATGCAAACGTTTTATGAAAGTTCGGAATCGAAAAATT
ACACAATGCCACTGTTTTTGATAACTACGGATCATCTTTGTGTGGTCCGC
TGTACGAGTGGCTGGGAAAGGGCCAAAGTATTAGGTTATCGGTCCAGTAA
CAACAAAATGACGATCGAGGTTGAGCTGGTTGACATAGGGGACATAATCC
GCGTGAGCCAACAGAATGTTAAGTTTTTGATCAAGCCGTTTGCCTTGCTG
CCACGTCAATGTTTGGCGGGTCGATTGGCGTTTATAACGCAGTGTAAGTC
TCCAAACTGGACCGCAGAAGTTGTTAATTTCTTTCACGATATGATATTAT
TGCGCCTGCTTTACGCCAAGGTCGAAGCTATTAAGAACAACACTGCCTAT
CTTGTGCTAGTTGATACGGAATCACAAGGACACACTGTTAATTTAAATAG
ATCGCTCATAGAAACTGGTTGGGTGCGGCGCTGCACGAGTGCATAGAAGC
TTTCTAGACCAT
BS23258.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:29:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tej-RA | 1680 | CG8589-PA | 1..1680 | 17..1696 | 8385 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:29:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tej-RA | 1942 | CG8589-RA | 108..1789 | 16..1697 | 8395 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:29:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14301119..14301608 | 1016..527 | 2435 | 99.8 | Minus |
| 2R | 25286936 | 2R | 14300425..14300791 | 1585..1219 | 1835 | 100 | Minus |
| 2R | 25286936 | 2R | 14301675..14301996 | 529..208 | 1610 | 100 | Minus |
| 2R | 25286936 | 2R | 14300857..14301060 | 1218..1015 | 1020 | 100 | Minus |
| 2R | 25286936 | 2R | 14302052..14302246 | 210..16 | 975 | 100 | Minus |
| 2R | 25286936 | 2R | 14300256..14300369 | 1697..1584 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:29:52 has no hits.
BS23258.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:34 Download gff for
BS23258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tej-RA | 109..1788 | 17..1696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:58:18 Download gff for
BS23258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tej-RA | 109..1788 | 17..1696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:42 Download gff for
BS23258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tej-RA | 109..1788 | 17..1696 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:42 Download gff for
BS23258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14300857..14301059 | 1016..1218 | 100 | <- | Minus |
| 2R | 14300257..14300367 | 1586..1696 | 100 | <- | Minus |
| 2R | 14300425..14300791 | 1219..1585 | 100 | <- | Minus |
| 2R | 14301120..14301605 | 530..1015 | 99 | <- | Minus |
| 2R | 14301675..14301995 | 209..529 | 100 | <- | Minus |
| 2R | 14302054..14302245 | 17..208 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:58:18 Download gff for
BS23258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10187762..10187872 | 1586..1696 | 100 | <- | Minus |
| arm_2R | 10187930..10188296 | 1219..1585 | 100 | <- | Minus |
| arm_2R | 10188362..10188564 | 1016..1218 | 100 | <- | Minus |
| arm_2R | 10188625..10189110 | 530..1015 | 99 | <- | Minus |
| arm_2R | 10189180..10189500 | 209..529 | 100 | <- | Minus |
| arm_2R | 10189559..10189750 | 17..208 | 100 | | Minus |
BS23258.pep Sequence
Translation from 16 to 1695
> BS23258.pep
MDDGGELSLVKKVVHSLVVSSPGKLTVEQLMRDYRSEEGCTLPYSKLGFK
DAESFLRSIPDTVTVTGHGQMAWITAVATAKSAHIQKLVRCQKKSKNRGS
HKPKYCYASEPSNLVFINESVSKMKNRKAPFPTYQVPRNLKLPVSYPNYN
RLLYPVHTPHIDQMISTGQQQSTLRTQRPSFPCNANSKSLKVNDWSQKDR
KQEPSKERNNQKYPKITTENKQEKETEELAQAFENLSVDVAPTDHQEKLK
CEIYEDNEDEFVRDPFIYGEVKEKEDEAVVLAFDAVSEDGFDLLSMTTTQ
QNAVKPLDPPEDCLHYASSDDGEDENAIPAYAVDHRVLDVDYPRDAVRSA
FTLPARDIESIIELQQRIRVQLVSLVNPHNFNFWIYNDDFKDYEAQFANM
QTFYESSESKNYTMPLFLITTDHLCVVRCTSGWERAKVLGYRSSNNKMTI
EVELVDIGDIIRVSQQNVKFLIKPFALLPRQCLAGRLAFITQCKSPNWTA
EVVNFFHDMILLRLLYAKVEAIKNNTAYLVLVDTESQGHTVNLNRSLIET
GWVRRCTSA*
BS23258.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:48:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tej-PA | 559 | CG8589-PA | 1..559 | 1..559 | 2928 | 100 | Plus |
