Clone BS23281 Report

Search the DGRC for BS23281

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:232
Well:81
Vector:pDNR-Dual
Associated Gene/Transcriptnclb-RA
Protein status:BS23281.pep: gold
Sequenced Size:1412

Clone Sequence Records

BS23281.complete Sequence

1412 bp assembled on 2011-01-25

GenBank Submission: KX801837

> BS23281.complete
GAAGTTATCAGTCGACATGGCTGAGGAAGGACCACCGGAGCCGAGCATTG
ATTTTGTCCCAGCTCTTTGCTTTGTACCACGCGGCGTGGCTAAGGATCGT
CCCGACAAGATCGTGCTGACGCAGGCGGAGCTGGCCAGGATTATCGGTGA
TACGCAACAGGAATTGGACGAGGAGAGCGACGACGATGCAGAGGAGGGCG
AAAATGCCGAGGAAGACCAAAACGACATGGATGTGGACGACCACGCGGAT
GCCAATAGTGAGAACCGCGATCCGCAGGACGAGTTCCAATTCCAGGAGTA
TGACAACGAGGCGAATGCTAATGTCACCAGTCTGGCCAACATCGTGGACG
CTGGCGAGCAAATCCCCGATGAGGACGAAGACTCCGAGGCCGAGGACGAG
GTGATCAAGCCCAGCGACAACCTCATTCTAGTGGGTCACGTTCAAGACGA
CGCCGCCTCCATGGAGGTGTGGGTTTTCAACCAGGAGGAGGAGGCTCTCT
ACACCCACCACGACTTTCTGCTGCCAAGCTTTCCTCTGTGCATCGAGTGG
ATGAATCACGACGCGGGCAGCGAAAAGGCGGGCAACATGTGCGCCATCGG
CTGCATGGATCCGATAATCACAGTCTGGGATCTAGACATACAGGACGCTA
TCGAGCCCACATTTAAGCTGGGTTCCAAAGGCAGCCGGAAGCAGAACAAA
GAGCAGTATGGACACAAGGACGCCGTGCTGGATCTCTCTTGGAACACCAA
CTTTGAGCACATTCTGGCCAGCGGGTCCGTGGACCAAACTGTGATTCTGT
GGGACATGGACGAGGGCCAGCCTCATACAACCATTACCGCTTTTGGCAAA
CAGATTCAGTCGCTGGAATTCCATCCGCAAGAGGCTCAAAGCATTCTTAC
CGGCTGTGCCGATGGATACGTGCGACTCTTCGATTGCCGCGACGCTGAGG
GCGTCAACTCGTCCAGCATTGAGTGGAAAGTTGACGGTGAAGTGGAGAAG
GTCCTGTGGCATCCCACACAGACCGACTACTTCATCGTGGGCACCAACGA
TGGCACCTTGCATTACGCCGACAAACGTTCTCCTGGACAACTGCTGTGGT
CCGTAAAGGCCCACAACGAGGAAATCTCCGGTGTGTGCTTCAACAACCAG
AAGCCTAATCTGCTGACCTCCACCTCCACGGAGGGCACCCTAAAGGTGTG
GAACTTTGATGGCACAGAGGCAAAGCACGTCTACGAGCACGAGTTCAACA
TGGGTCGCTTGCAGTGCATGCGCCAGTGCCCCGAGGATCCCTACACCCTG
GCCTTCGGCGGAGAGAAGCCTCCGCGCTGTGCGATCTTTAACATCAAGAA
CTCGATAGCCGTGCGCCGAACGTTTGGAATCCCTGATGCAGAGTAGAAGC
TTTCTAGACCAT

BS23281.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
nclb-RA 1380 CG6751-PA 1..1380 17..1396 6900 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
nclb-RA 1549 CG6751-RA 90..1469 17..1396 6900 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:30:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10875837..10877216 17..1396 6900 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:30:19 has no hits.

BS23281.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:38 Download gff for BS23281.complete
Subject Subject Range Query Range Percent Splice Strand
CG6751-RA 84..1463 17..1396 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:58:30 Download gff for BS23281.complete
Subject Subject Range Query Range Percent Splice Strand
nclb-RA 90..1469 17..1396 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:53 Download gff for BS23281.complete
Subject Subject Range Query Range Percent Splice Strand
nclb-RA 90..1469 17..1396 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:53 Download gff for BS23281.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10875837..10877216 17..1396 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:58:30 Download gff for BS23281.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6763342..6764721 17..1396 100   Plus

BS23281.pep Sequence

Translation from 16 to 1395

> BS23281.pep
MAEEGPPEPSIDFVPALCFVPRGVAKDRPDKIVLTQAELARIIGDTQQEL
DEESDDDAEEGENAEEDQNDMDVDDHADANSENRDPQDEFQFQEYDNEAN
ANVTSLANIVDAGEQIPDEDEDSEAEDEVIKPSDNLILVGHVQDDAASME
VWVFNQEEEALYTHHDFLLPSFPLCIEWMNHDAGSEKAGNMCAIGCMDPI
ITVWDLDIQDAIEPTFKLGSKGSRKQNKEQYGHKDAVLDLSWNTNFEHIL
ASGSVDQTVILWDMDEGQPHTTITAFGKQIQSLEFHPQEAQSILTGCADG
YVRLFDCRDAEGVNSSSIEWKVDGEVEKVLWHPTQTDYFIVGTNDGTLHY
ADKRSPGQLLWSVKAHNEEISGVCFNNQKPNLLTSTSTEGTLKVWNFDGT
EAKHVYEHEFNMGRLQCMRQCPEDPYTLAFGGEKPPRCAIFNIKNSIAVR
RTFGIPDAE*

BS23281.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
nclb-PA 459 CG6751-PA 1..459 1..459 2471 100 Plus
Caf1-PB 429 CG4236-PB 228..415 232..409 167 26.8 Plus
Caf1-PA 430 CG4236-PA 229..416 232..409 167 26.8 Plus