BS23290.complete Sequence
1325 bp assembled on 2011-01-25
GenBank Submission: KX806427
> BS23290.complete
GAAGTTATCAGTCGACATGTCGCTGAACAAGTGCCTTCTATTCGCCCTCC
TGGCCATCGTGGCCAGCGCATCCGTGAGCGCGGAACGTGTTCGCTATGAC
AACTACCGCATGTACAAGGTCAACTCGGAGAATGCCAAGCAACTGGAGGT
GCTGAAGGATCTCGAGGGATCCAGCGACTCAATCATGTTCTTGGATGGCG
TTCATCTGGTTGGTGCCGATATTCAGATAATCGTGGCTCCCCACAAGGTG
CCCGACTTCCTGGAGATTCTGGGCAAGTCTGAAATCAAGTATGAGCTGCA
ATCGCGCGATGTGCAAAAGTCTCTGGACGAGATCGACGAGAAGGTCGCTA
TCAAGGGACGTGCCACCACCGCCTACAACTGGGCCCAGTACTACGAACTC
GACGACACCTATGCCTGGCTCCAGTCCCTGGCCCAGACGAATCCCGGAGT
GGTCACCCTCATTGAGGGCGGCAAGACCTACCAGGGACGCTCCATCCTCG
GTGTTAAGATCACCAAGGGAGGTGAGACCATAAACGGCAAGGCCAAGCCC
GGCATCTTCCTGGAGGCCGGTATCCATGCCCGCGAGTGGATTGCTCCAGC
TGCCGCCACCTTTATCATCAACCAACTGCTGACCTCCGAGGTGGAGAACA
TCAAGGAATTGGCCGAGAACTACACCTGGTACGTCCTGCCCCACGCCAAT
CCCGATGGCTATGTCTACACCCACACCACGAATCGCTTGTGGCGCAAGAC
CCGTACTCCCTACGGCAGCTGCTTCGGCGCCGATCCCAACAGGAACTGGG
GCTTCCACTGGAACGAGGTGGGTGCCAGCAGCAGTGCCTGCTCCGATACC
TACGCCGGACCTTCCGCTTTCTCTGAGATCGAGACACTGTCACTGTCCAA
GTTCATTGAGGGACTGAAGGGCAAGGTCCAGCTGTACCTCTCGCTGCATG
CCTACTCCCAATACCTGCTGTATCCCTATGGACACACCTCTGATCTGCCT
GACAATGTGGCCGACTTTGAGAAGGTCTTCGATGCCTCCATTGCAGCCGT
GAACAAGCGTTACGGTACCACGTACACTGGAGGCAACATTTACGATGCCA
TCTACCCAGCGGCTGGTGCCAGTGTGGACTGGGCCTACGGAACCCAGGAT
GTGCGCATGGCCTTCTGCTATGAACTGCGTCCCTCGTCGACCTCCTACCT
CACCGGATTCAAGCTTCCCGCCGAGCAAATCGTACCCGCCAGCGAGGAGC
TGCTTGACTCCATCGTGGCCATGGCCACCGAGGTCAAGAGCCTGGGCTAC
TTTGACTAAAAGCTTTCTAGACCAT
BS23290.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:30:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17633-RA | 1293 | CG17633-PA | 1..1293 | 17..1309 | 6465 | 100 | Plus |
| CG4017-RA | 1275 | CG4017-PA | 634..707 | 677..750 | 220 | 86.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:30:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17633-RA | 1350 | CG17633-RA | 25..1317 | 17..1309 | 6465 | 100 | Plus |
| CG4017-RA | 1616 | CG4017-RA | 648..721 | 677..750 | 220 | 86.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:30:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9769084..9770376 | 17..1309 | 6465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:30:28 has no hits.
BS23290.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:39 Download gff for
BS23290.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17633-RA | 18..1308 | 17..1307 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:58:34 Download gff for
BS23290.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17633-RA | 25..1315 | 17..1307 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:58 Download gff for
BS23290.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17633-RA | 25..1315 | 17..1307 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:58 Download gff for
BS23290.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9769084..9770374 | 17..1307 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:58:34 Download gff for
BS23290.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9769084..9770374 | 17..1307 | 100 | | Plus |
BS23290.pep Sequence
Translation from 16 to 1308
> BS23290.pep
MSLNKCLLFALLAIVASASVSAERVRYDNYRMYKVNSENAKQLEVLKDLE
GSSDSIMFLDGVHLVGADIQIIVAPHKVPDFLEILGKSEIKYELQSRDVQ
KSLDEIDEKVAIKGRATTAYNWAQYYELDDTYAWLQSLAQTNPGVVTLIE
GGKTYQGRSILGVKITKGGETINGKAKPGIFLEAGIHAREWIAPAAATFI
INQLLTSEVENIKELAENYTWYVLPHANPDGYVYTHTTNRLWRKTRTPYG
SCFGADPNRNWGFHWNEVGASSSACSDTYAGPSAFSEIETLSLSKFIEGL
KGKVQLYLSLHAYSQYLLYPYGHTSDLPDNVADFEKVFDASIAAVNKRYG
TTYTGGNIYDAIYPAAGASVDWAYGTQDVRMAFCYELRPSSTSYLTGFKL
PAEQIVPASEELLDSIVAMATEVKSLGYFD*
BS23290.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:48:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17633-PA | 430 | CG17633-PA | 1..430 | 1..430 | 2242 | 100 | Plus |
| CG4017-PA | 424 | CG4017-PA | 3..411 | 7..419 | 1106 | 50.1 | Plus |
| CG2915-PA | 453 | CG2915-PA | 51..452 | 23..429 | 814 | 39.5 | Plus |
| CG2915-PB | 453 | CG2915-PB | 51..452 | 23..429 | 814 | 39.5 | Plus |
| CG7025-PA | 429 | CG7025-PA | 1..422 | 1..428 | 766 | 38.4 | Plus |
