BS23292.complete Sequence
2342 bp assembled on 2011-02-16
GenBank Submission: KX800179
> BS23292.complete
GAAGTTATCAGTCGACATGTTATCCAATCGGGCGTTTGGAGAAACAATTG
AGGACTATGAAGTACAGCACTTGCTGGGTAAAGGTGGTTTTGCGACCGTC
TACAAGGCGCGGTGCCTGCACACTCACCAGGATGTGGCCATAAAGATGAT
CGATAAAAAACTAATCCAGGGCACTGGACTCACTAACCGCGTTCGCCAGG
AAGTGGAAATCCACTCCCGCCTGAAGCATCCCTCTGTGCTTCAGCTGTAC
ACTTTCTTTCAGGACGCCAACTATGTGTATTTGGTGCTCGAGCTGGCCCA
TAATGGGGAGCTTCATCGCTATATGAACCACATCGCCAGACCCTTCACAG
AGACGGAAGCTGCTTCCATTCTGAAGCAGGTGGTGGCGGGACTTTTGTAC
CTGCACTCCCACAACATCATGCACCGCGACATTTCGCTGTCCAACCTACT
GCTTAGCAGGGAAATGCACGTCAAGATAGCCGATTTTGGACTGGCCACCC
AATTAAAGCGACCTGATGAGCGCCATATGACCATGTGTGGAACTCCGAAC
TATATTTCGCCTGAGGTGGTATCGCGAACGTCTCACGGACTGCCCGCGGA
CGTCTGGAGCGTTGGATGCATGCTGTACACCCTGCTGGTTGGACGCCCGC
CCTTCGAAACCGATGCAGTGCAGTCAACCCTTAACAAAGTTGTGATGTCC
GAGTACATTATGCCGGCTCACTTGTCTTACGAGGCGCAGGACCTGATAAA
CAAATTATTAAAAAAGCTCCCGCACGAACGAATTACCCTGGAGGCTGTTC
TCTGCCATCCCTTTATGTTGAAATGCTCAAATGGTGGACACTCTGCGCCG
GGAGCGTTGAATGTGTTCAGCCAGAGTATGGAAAGTGGCGATAGTGGAAT
CATAACATTTGCTAGCAGTGACTCCCGGAATTCCCAGCAAATTCGATCTG
TGGAAAACTCAGGACCACAACAAGTGCTTCCTCAAATACGGGAGGAATTT
AAGCAAGTCCATCATAAATTGCCTTATGAACAGACAGGTTTATTTGGGCA
AGCTTCAACTGGCTTGGCAGAGCCAAATTGGCCAGGAGCTGCTAAGTCCT
CAGCGTTCTGCATGGAGGCGGGCAATGTACCCAATTCCAAACAGGCATCT
CTTAAGGAAGATCGCATTTCGGTGCCACCATTGAATACTAAAAGACTGCT
TCCGACGCGTTATAAGACGAAGAATGCTATAATGAGTATTTTGCGCAATG
GAGAGGTAGTTCTCGAGTTTCTTAAGTTTCGGCCAACCTATAATGAAGAT
CGCATTAATGATATTTGTCGCATATCGGATGACGGACAGCGAATCATAAT
TTATCAACCAGATCCTGGGCGTGGCTTACCAGTGAGAGAGCAGCCACCAG
ATCTTCAAATACCAAGCGGAGATTGTGTATATAACTACGATAATTTGCCC
AGCAAGCACTGGAAAAAATACATATACGGAGCTCGATTTGTAGGGCTGGT
AAAAAGCAAAACACCAAAAGTCACATACTTCAGTACTCTAGGCAAATGCC
AATTGATGGAGACAATGACCGACTTTGAGATTCGTTTCTACTCGGGAGCT
AAGCTACTAAAGACGCCGTCCGAGGGGCTAAAGGTCTACGATCGAAATGG
AATGTTGCTCTCGGATTATTCCTGTTCGGAGTCACGATCCCTAATAGAGC
ACGGAAACGAGTGTTTCACCCACTGTGTCAACATCAGTAATGCCTTGGAA
GTAGCTCAGACGAAAGATAATTCGTGTTTTCCAGTCACAATCGGACGAAG
ACCTATAACAGATGTACAACCCGCTCAGAGATTGGATGGCCTACGAGATA
CCACCAATATTGCGTTTTCCACACCAAAATCTAATCAGGGCTCAATAAAC
TTTTCCTTAAGCACTATTTCGTCGACTCGAAATACTTCAGATTTTGGAAC
CAACTGCTCTAGGTCCAACATGCTAGCCGCCCATCAAAATATACCCATCA
AACGCATAAACGTTCCTGAAATCGGAATAGCTACTGAGCTCTCCCATGGA
GTTGTCCAAGTGCAATTTTATGATGGATCCGTGGTCTCTGTTATTCCGAG
CATGCAAGGTGGTGGTATAACCTATACCCAACCCAACGGAACTTCAACCC
ACTTCGGCAAGGGCGACGACTTGCCATTCCCGGTCAGAGATAGAGTCGGT
CAGATACCAAACATTCAGTTAAAGTTGAAGACAGCTCCATTGCTGGGAAG
CGGCAGGAAAACTGACTACAACAATGCAATGACTCCCAAAACGACAACGC
CTTATTATAATCGCATGCTTCTTTAAAAGCTTTCTAGACCAT
BS23292.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:37:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SAK-RA | 2310 | CG7186-PA | 1..2310 | 17..2326 | 11550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:37:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SAK-RA | 3371 | CG7186-RA | 137..2446 | 17..2326 | 11550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:37:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21514737..21515508 | 919..148 | 3860 | 100 | Minus |
| 3L | 28110227 | 3L | 21513642..21514160 | 1889..1371 | 2595 | 100 | Minus |
| 3L | 28110227 | 3L | 21514220..21514673 | 1371..918 | 2270 | 100 | Minus |
| 3L | 28110227 | 3L | 21513066..21513355 | 2326..2037 | 1450 | 100 | Minus |
| 3L | 28110227 | 3L | 21513436..21513588 | 2038..1886 | 765 | 100 | Minus |
| 3L | 28110227 | 3L | 21515561..21515658 | 148..51 | 490 | 100 | Minus |
| 3L | 28110227 | 3L | 21515715..21515751 | 53..17 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:37:04 has no hits.
BS23292.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:18:33 Download gff for
BS23292.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SAK-RA | 139..2441 | 22..2324 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:48:29 Download gff for
BS23292.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SAK-RA | 142..2444 | 22..2324 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:47 Download gff for
BS23292.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SAK-RA | 142..2444 | 22..2324 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:47 Download gff for
BS23292.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21513068..21513353 | 2039..2324 | 100 | <- | Minus |
| 3L | 21513436..21513585 | 1889..2038 | 100 | <- | Minus |
| 3L | 21513643..21514159 | 1372..1888 | 100 | <- | Minus |
| 3L | 21514220..21514673 | 918..1371 | 100 | <- | Minus |
| 3L | 21514739..21515507 | 149..917 | 100 | <- | Minus |
| 3L | 21515561..21515656 | 53..148 | 100 | <- | Minus |
| 3L | 21515716..21515746 | 22..52 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:48:29 Download gff for
BS23292.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21506168..21506453 | 2039..2324 | 100 | <- | Minus |
| arm_3L | 21506536..21506685 | 1889..2038 | 100 | <- | Minus |
| arm_3L | 21506743..21507259 | 1372..1888 | 100 | <- | Minus |
| arm_3L | 21507320..21507773 | 918..1371 | 100 | <- | Minus |
| arm_3L | 21507839..21508607 | 149..917 | 100 | <- | Minus |
| arm_3L | 21508661..21508756 | 53..148 | 100 | <- | Minus |
| arm_3L | 21508816..21508846 | 22..52 | 100 | | Minus |
BS23292.pep Sequence
Translation from 16 to 2325
> BS23292.pep
MLSNRAFGETIEDYEVQHLLGKGGFATVYKARCLHTHQDVAIKMIDKKLI
QGTGLTNRVRQEVEIHSRLKHPSVLQLYTFFQDANYVYLVLELAHNGELH
RYMNHIARPFTETEAASILKQVVAGLLYLHSHNIMHRDISLSNLLLSREM
HVKIADFGLATQLKRPDERHMTMCGTPNYISPEVVSRTSHGLPADVWSVG
CMLYTLLVGRPPFETDAVQSTLNKVVMSEYIMPAHLSYEAQDLINKLLKK
LPHERITLEAVLCHPFMLKCSNGGHSAPGALNVFSQSMESGDSGIITFAS
SDSRNSQQIRSVENSGPQQVLPQIREEFKQVHHKLPYEQTGLFGQASTGL
AEPNWPGAAKSSAFCMEAGNVPNSKQASLKEDRISVPPLNTKRLLPTRYK
TKNAIMSILRNGEVVLEFLKFRPTYNEDRINDICRISDDGQRIIIYQPDP
GRGLPVREQPPDLQIPSGDCVYNYDNLPSKHWKKYIYGARFVGLVKSKTP
KVTYFSTLGKCQLMETMTDFEIRFYSGAKLLKTPSEGLKVYDRNGMLLSD
YSCSESRSLIEHGNECFTHCVNISNALEVAQTKDNSCFPVTIGRRPITDV
QPAQRLDGLRDTTNIAFSTPKSNQGSINFSLSTISSTRNTSDFGTNCSRS
NMLAAHQNIPIKRINVPEIGIATELSHGVVQVQFYDGSVVSVIPSMQGGG
ITYTQPNGTSTHFGKGDDLPFPVRDRVGQIPNIQLKLKTAPLLGSGRKTD
YNNAMTPKTTTPYYNRMLL*
BS23292.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:14:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SAK-PA | 769 | CG7186-PA | 1..769 | 1..769 | 4029 | 100 | Plus |
| polo-PB | 576 | CG12306-PB | 25..277 | 14..267 | 522 | 38.9 | Plus |
| polo-PA | 576 | CG12306-PA | 25..277 | 14..267 | 522 | 38.9 | Plus |
| aurA-PA | 411 | CG3068-PA | 151..407 | 11..268 | 480 | 38.3 | Plus |
| aurB-PA | 329 | CG6620-PA | 36..302 | 1..264 | 470 | 38.2 | Plus |
