BS23294.complete Sequence
1106 bp assembled on 2011-01-25
GenBank Submission: KX800391
> BS23294.complete
GAAGTTATCAGTCGACATGTCCACACAGCAAGCGGAGAATGAGGAGAGTG
CAGCGGCGAAGTCCAAGCGACCTTCAGATTCGGCCTTCAAGCAACAGCGC
CTGCCCGCCTGGCAGCCCGTCCTGACCGCCCGCACCGTACTGCCCACCTT
CTTCGTTATCGGAGTTCTATTCATACCCATCGGCGTGGTCCTGCTCCACC
TGAGCAACACCGCCAACGAGCTGATCATCGACTACACCAAGTGCAGGCGC
TCGGGCGGAAATACCACCTGTGCGGAGTATCTGGAGGCCAACCCCGGCGT
TACGTGCCCCTGCGAGGTGCCCTTCGTCCTGCCCTCGGACTTCAATGGTG
TGGTATACATGTACTACGGACTGACCAACTACTATCAGAACCATCGGCGC
TATGTGAAGTCACGGGACGACGAGCAGCTGCTGGGTCACCTGTCGCAAAC
GCCCAGTACAGACTGTGCCCCCTTCGCCTATGATCCCGATTCCGGAAAGC
CCATCGCGCCCTGCGGTGCCATTGCCAACTCGCTGTTCAATGACACGCTG
ACCCTCTTGCAGGGTGGATCCGAGATCAAGCTGCTGAAGACGGGCATTGC
CTGGCCGTCGGACAAGCGCGTCAAGTTCCGAAACCCAGAGGGTAACCTGA
ACGTCTCCCTTGAGGGCTTCTCAAAGCCAATTTTCTGGCAGAAGGGTCTG
GCCGACCTGGACCCGGAGAATCCGGACAACAATGGCTTCCAGAACGAGGA
TCTGATCGTGTGGATGCGCACCGCCGCTCTGCCCAGCTTCCGGAAGCTAT
ATCGCCGTCTCAACCAAACGAACACCAACTATGCCAACGGCCTGAAGTCT
GGCAATTATACGCTTAACATTAAGTATAATTATCCGGTGGTGTCGTTCGA
CGGCACGAAGCGAATGATACTCTCCACCACATCCGTGCTCGGTGGCAAGA
ACCCGTTCCTGGGCATTGCGTACATTGTGGTGGGTGCCATTTGCATCACC
CTGGGCCTGGCCCTGCTCTTTATTCATATGCGATGCAGTCGCAGCAACAT
GGAGATGATCAACGTGAACCCGCACACGCAGTACTCCTAGAAGCTTTCTA
GACCAT
BS23294.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:30:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9947-RA | 1074 | CG9947-PA | 1..1074 | 17..1090 | 5355 | 99.9 | Plus |
| CG9947-RB | 1044 | CG9947-PB | 1..1030 | 17..1046 | 5135 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:30:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9947-RA | 1261 | CG9947-RA | 94..1169 | 16..1091 | 5365 | 99.9 | Plus |
| CG9947-RB | 3079 | CG9947-RB | 94..1124 | 16..1046 | 5140 | 99.9 | Plus |
| CG9947-RB | 3079 | CG9947-RB | 1213..1260 | 1044..1091 | 240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:30:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16439827..16440163 | 878..542 | 1685 | 100 | Minus |
| X | 23542271 | X | 16440656..16440928 | 347..75 | 1365 | 100 | Minus |
| X | 23542271 | X | 16440217..16440412 | 542..347 | 980 | 100 | Minus |
| X | 23542271 | X | 16439597..16439762 | 1044..879 | 815 | 99.4 | Minus |
| X | 23542271 | X | 16441142..16441203 | 77..16 | 310 | 100 | Minus |
| X | 23542271 | X | 16439240..16439289 | 1091..1042 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:30:24 has no hits.
BS23294.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:38 Download gff for
BS23294.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9947-RA | 79..1152 | 17..1090 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:58:32 Download gff for
BS23294.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9947-RA | 95..1168 | 17..1090 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:55 Download gff for
BS23294.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9947-RA | 95..1168 | 17..1090 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:55 Download gff for
BS23294.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16441142..16441202 | 17..77 | 100 | | Minus |
| X | 16439241..16439286 | 1045..1090 | 100 | <- | Minus |
| X | 16439597..16439762 | 879..1044 | 99 | <- | Minus |
| X | 16439827..16440162 | 543..878 | 100 | <- | Minus |
| X | 16440217..16440412 | 347..542 | 100 | <- | Minus |
| X | 16440657..16440925 | 78..346 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:58:32 Download gff for
BS23294.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16335175..16335235 | 17..77 | 100 | | Minus |
| arm_X | 16333274..16333319 | 1045..1090 | 100 | <- | Minus |
| arm_X | 16333630..16333795 | 879..1044 | 99 | <- | Minus |
| arm_X | 16333860..16334195 | 543..878 | 100 | <- | Minus |
| arm_X | 16334250..16334445 | 347..542 | 100 | <- | Minus |
| arm_X | 16334690..16334958 | 78..346 | 100 | <- | Minus |
BS23294.pep Sequence
Translation from 16 to 1089
> BS23294.pep
MSTQQAENEESAAAKSKRPSDSAFKQQRLPAWQPVLTARTVLPTFFVIGV
LFIPIGVVLLHLSNTANELIIDYTKCRRSGGNTTCAEYLEANPGVTCPCE
VPFVLPSDFNGVVYMYYGLTNYYQNHRRYVKSRDDEQLLGHLSQTPSTDC
APFAYDPDSGKPIAPCGAIANSLFNDTLTLLQGGSEIKLLKTGIAWPSDK
RVKFRNPEGNLNVSLEGFSKPIFWQKGLADLDPENPDNNGFQNEDLIVWM
RTAALPSFRKLYRRLNQTNTNYANGLKSGNYTLNIKYNYPVVSFDGTKRM
ILSTTSVLGGKNPFLGIAYIVVGAICITLGLALLFIHMRCSRSNMEMINV
NPHTQYS*
BS23294.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:48:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9947-PA | 357 | CG9947-PA | 1..357 | 1..357 | 1893 | 100 | Plus |
| CG9947-PB | 347 | CG9947-PB | 1..343 | 1..343 | 1816 | 100 | Plus |
