BS23296.complete Sequence
1772 bp assembled on 2011-02-15
GenBank Submission: KX804872
> BS23296.complete
GAAGTTATCAGTCGACATGATGGCCGTTGCAGCAGCCCAAAAGAACCGCG
AGATGTTCGCCATCAAGAAATCCTACAGTATTGAGAATGGCTATCCATCC
CGCCGTCGCAGCCTGGTGGATGATGCCCGTTTCGAGACCCTGGTGGTCAA
GCAGACCAAACAAACCGTCCTCGAGGAGGCCCGCAGCAAGGCAAATGACG
ATTCCCTGGAAGATTGCATTGTGCAGGCTCAGGAGCACATTCCCTCCGAG
CAAGATGTGGAGCTCCAGGACGAGCATGCCAATCTGGAGAACCTGCCCTT
GGAGGAATATGTTCCAGTTGAGGAGGATGTTGAGTTTGAGAGCGTTGAAC
AGGAGCAGTCGGAGTCGCAGTCGCAGGAGCCAGAAGGCAACCAACAGCCG
ACCAAGAACGATTACGGTCTCACCGAGGACGAGATTTTGTTGGCCAATGC
CGCCTCCGAATCCTCGGATGCCGAGGCTGCCATGCAGAGTGCCGCTTTGG
TGGTCCGCCTCAAGGAGGGCATCTCCTCCTTGGGTCGCATCCTCAAGGCC
ATCGAAACCTTCCACGGCACCGTCCAGCATGTGGAGTCCCGTCAGTCGCG
CGTGGAGGGCGTGGACCACGATGTCCTCATCAAGTTGGACATGACCCGTG
GCAATCTGCTGCAGCTGATCCGCTCCCTCAGGCAGTCGGGCTCCTTCAGC
AGCATGAATCTGATGGCCGACAATAACTTGAATGTCAAGGCTCCGTGGTT
CCCCAAGCACGCCTCCGAATTGGATAACTGCAACCATCTGATGACCAAGT
ACGAGCCCGATTTGGACATGAACCACCCCGGATTCGCCGACAAGGTATAC
CGCCAGCGTCGCAAGGAAATTGCCGAGATCGCATTCGCCTACAAGTACGG
AGACCCGATCCCATTCATCGACTACTCCGATGTGGAGGTCAAGACCTGGC
GCTCGGTGTTCAAGACCGTTCAGGATCTGGCTCCCAAGCACGCCTGTGCC
GAGTACCGGGCCGCCTTCCAGAAGCTCCAGGATGAGCAGATCTTCGTGGA
GACCCGTCTGCCCCAGTTGCAGGAGATGTCCGACTTTCTGCGCAAGAACA
CCGGATTCTCTCTCCGTCCTGCCGCCGGTCTTTTGACTGCCCGGGACTTC
CTTGCCTCCTTGGCCTTCCGCATCTTCCAGAGCACCCAGTATGTGCGCCA
CGTTAACTCACCATACCACACCCCCGAGCCCGACTCCATTCACGAGCTGC
TGGGTCACATGCCCCTGCTGGCCGATCCCAGCTTCGCCCAGTTCTCGCAG
GAGATTGGACTGGCCTCGCTGGGTGCCTCCGACGAAGAAATCGAGAAGCT
GTCCACGGTATACTGGTTCACTGTTGAGTTCGGTCTCTGCAAGGAACATG
GTCAGATCAAGGCCTACGGTGCTGGACTCCTGAGCTCCTACGGTGAGCTG
CTCCATGCCATCAGCGACAAGTGCGAGCACCGCGCCTTCGAGCCCGCATC
CACCGCCGTGCAGCCCTACCAGGATCAGGAGTACCAGCCCATCTACTATG
TGGCCGAGAGCTTCGAGGATGCCAAGGACAAGTTCCGTCGCTGGGTGAGC
ACCATGTCGCGTCCATTCGAGGTGCGTTTCAACCCGCACACCGAGCGCGT
CGAGGTGCTGGACTCCGTCGACAAGCTGGAGACTCTGGTGCACCAGATGA
ACACGGAGATTTTGCATCTGACCAACGCCATCTCCAAGTTGCGACGCCCG
TTCTAAAAGCTTTCTAGACCAT
BS23296.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:44:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ple-RC | 1740 | CG10118-PC | 1..1740 | 17..1756 | 8700 | 100 | Plus |
| ple-RB | 1740 | CG10118-PB | 1..1740 | 17..1756 | 8700 | 100 | Plus |
| ple-RA | 1527 | CG10118-PA | 181..1527 | 410..1756 | 6735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:44:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ple-RC | 3806 | CG10118-RC | 453..2192 | 17..1756 | 8700 | 100 | Plus |
| ple-RB | 3124 | CG10118-RB | 453..2192 | 17..1756 | 8700 | 100 | Plus |
| ple-RA | 2911 | CG10118-RA | 633..1979 | 410..1756 | 6735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:44:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6716130..6716950 | 1230..410 | 4105 | 100 | Minus |
| 3L | 28110227 | 3L | 6714970..6715369 | 1756..1357 | 2000 | 100 | Minus |
| 3L | 28110227 | 3L | 6715706..6715834 | 1359..1231 | 645 | 100 | Minus |
| 3L | 28110227 | 3L | 6717553..6717673 | 317..197 | 605 | 100 | Minus |
| 3L | 28110227 | 3L | 6717904..6718017 | 197..84 | 570 | 100 | Minus |
| 3L | 28110227 | 3L | 6717334..6717428 | 410..316 | 475 | 100 | Minus |
| 3L | 28110227 | 3L | 6719005..6719073 | 85..17 | 345 | 100 | Minus |
| 3L | 28110227 | 3L | 1191463..1191581 | 1359..1241 | 250 | 80.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:44:21 has no hits.
BS23296.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-15 10:19:32 Download gff for
BS23296.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ple-RB | 452..2189 | 17..1754 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:44 Download gff for
BS23296.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ple-RB | 453..2190 | 17..1754 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:30:56 Download gff for
BS23296.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ple-RB | 453..2190 | 17..1754 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:30:56 Download gff for
BS23296.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6714972..6715368 | 1358..1754 | 100 | <- | Minus |
| 3L | 6715708..6715834 | 1231..1357 | 100 | <- | Minus |
| 3L | 6716130..6716949 | 411..1230 | 100 | <- | Minus |
| 3L | 6717334..6717426 | 318..410 | 100 | <- | Minus |
| 3L | 6717553..6717672 | 198..317 | 100 | <- | Minus |
| 3L | 6717904..6718015 | 86..197 | 100 | <- | Minus |
| 3L | 6719005..6719073 | 17..85 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:44 Download gff for
BS23296.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6708072..6708468 | 1358..1754 | 100 | <- | Minus |
| arm_3L | 6708808..6708934 | 1231..1357 | 100 | <- | Minus |
| arm_3L | 6709230..6710049 | 411..1230 | 100 | <- | Minus |
| arm_3L | 6710434..6710526 | 318..410 | 100 | <- | Minus |
| arm_3L | 6710653..6710772 | 198..317 | 100 | <- | Minus |
| arm_3L | 6711004..6711115 | 86..197 | 100 | <- | Minus |
| arm_3L | 6712105..6712173 | 17..85 | 100 | | Minus |
BS23296.pep Sequence
Translation from 16 to 1755
> BS23296.pep
MMAVAAAQKNREMFAIKKSYSIENGYPSRRRSLVDDARFETLVVKQTKQT
VLEEARSKANDDSLEDCIVQAQEHIPSEQDVELQDEHANLENLPLEEYVP
VEEDVEFESVEQEQSESQSQEPEGNQQPTKNDYGLTEDEILLANAASESS
DAEAAMQSAALVVRLKEGISSLGRILKAIETFHGTVQHVESRQSRVEGVD
HDVLIKLDMTRGNLLQLIRSLRQSGSFSSMNLMADNNLNVKAPWFPKHAS
ELDNCNHLMTKYEPDLDMNHPGFADKVYRQRRKEIAEIAFAYKYGDPIPF
IDYSDVEVKTWRSVFKTVQDLAPKHACAEYRAAFQKLQDEQIFVETRLPQ
LQEMSDFLRKNTGFSLRPAAGLLTARDFLASLAFRIFQSTQYVRHVNSPY
HTPEPDSIHELLGHMPLLADPSFAQFSQEIGLASLGASDEEIEKLSTVYW
FTVEFGLCKEHGQIKAYGAGLLSSYGELLHAISDKCEHRAFEPASTAVQP
YQDQEYQPIYYVAESFEDAKDKFRRWVSTMSRPFEVRFNPHTERVEVLDS
VDKLETLVHQMNTEILHLTNAISKLRRPF*
BS23296.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:10:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ple-PC | 579 | CG10118-PC | 1..579 | 1..579 | 2979 | 100 | Plus |
| ple-PB | 579 | CG10118-PB | 1..579 | 1..579 | 2979 | 100 | Plus |
| ple-PA | 508 | CG10118-PA | 35..508 | 103..579 | 2334 | 95.2 | Plus |
| Hn-PB | 447 | CG7399-PB | 17..446 | 148..576 | 1022 | 47.1 | Plus |
| Hn-PC | 452 | CG7399-PC | 22..451 | 148..576 | 1022 | 47.1 | Plus |
| ple-PA | 508 | CG10118-PA | 1..90 | 1..90 | 301 | 73.3 | Plus |
