BS23302.complete Sequence
1124 bp assembled on 2011-01-25
GenBank Submission: KX800163
> BS23302.complete
GAAGTTATCAGTCGACATGTATTCAGCACCAGCGGCAAAAATCAAGCACT
TTGGCTCCCTTAAAACGGTAGCAGCTTGGGCCGGAATTCTCGGAGTGGCC
CAGTCCATCATCTGGATGGGCTTGACCATAACAGCGATATGTGCCTACAA
TTGTGTCCTGTATATTACAAATGACCTCACCTATGGCTCCATGGTCAAGA
CTGTATTCTTTGACGTGTACTTCAAGGGCAGTTGCAAGATGAATCCCAGT
GATTACCAGAACTACGACCAAACCATCCTGAATACAGTGACTACTGTTTT
TGATCCCACCCAGATTTTGATCTGGAATTCGGTCTACCTGGGCGTTTCGG
TTTGCTGGCTAATCGTCTCCGTTGTGCTGCTACTGTGGGTGCGCAAGGAC
AACCCGAAGCAGACCGTGACTGCCATCTACATCTGGGCCTTCTTCGTGGC
CACCATATGCTGCATGGATGTAGCTTCTGGAGTGATCTTCGGCGTGGACT
ACGGACGTTTCCACAAGGAGGCTCTGAGGTATAATGCCAATAGTATCAAT
GCTGGTGTCATCTATCCCTTGGCTGCCACCTTGATCGCCGGAGGAGTGGC
TGCCATTTCCATGATGGTCATCTCCTTCAAGGGATTCGTTCTGTGGTTCA
TTAACTTTGGACTGCTCGCATACCTTGTCGCGAGAGCCATTCGAATTTCC
ACCGATAAGGACAATGTGGATACTTTGTTCAATCCTCGCAAGGATTCCAA
TGATATTCTGACCACCAGGACCCCGATTCGCGCCTACGAGGAGGTGGAGG
TCCAGGCGTATAACAATGCCGCCTACGTTCCGGAAACCCGTTCCATGGCC
GAGACCATCCAGGTGAACGAGGGAGCCATCGTGCGGGCGGCGCACTTGTC
GATGGACTCGAACCTAATGGATCGTCGCTTCAGGGACCTCAACGCGTACC
AGCAGTACCCGCCTCCGAATCCGCAGCAAAGTCGCCCGCTGAAGCAATCT
TCGCAGAATCCCATGGAGACCATTGTGGTGGCCACCTCGGGATTCCCCGT
GCCGGACTACTCCCCGCAGCCCAGTCCCAATGGCGTTCTGCGCCACAACC
AGTACTAGAAGCTTTCTAGACCAT
BS23302.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:31:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12974-RD | 1092 | CG12974-PD | 1..1092 | 17..1108 | 5460 | 100 | Plus |
| CG12974-RB | 1092 | CG12974-PB | 1..1092 | 17..1108 | 5460 | 100 | Plus |
| CG12974-RC | 993 | CG12974-PC | 1..993 | 116..1108 | 4965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:31:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12974-RD | 1844 | CG12974-RD | 302..1394 | 17..1109 | 5465 | 100 | Plus |
| CG12974-RB | 1606 | CG12974-RB | 302..1394 | 17..1109 | 5465 | 100 | Plus |
| CG12974-RC | 1972 | CG12974-RC | 748..1760 | 97..1109 | 5065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:31:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21283145..21283477 | 719..387 | 1665 | 100 | Minus |
| 3L | 28110227 | 3L | 21282202..21282518 | 1109..793 | 1585 | 100 | Minus |
| 3L | 28110227 | 3L | 21284181..21284471 | 387..97 | 1455 | 100 | Minus |
| 3L | 28110227 | 3L | 21285054..21285135 | 98..17 | 410 | 100 | Minus |
| 3L | 28110227 | 3L | 21282580..21282655 | 793..718 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:31:16 has no hits.
BS23302.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:46 Download gff for
BS23302.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12974-RB | 130..1221 | 17..1108 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:58:57 Download gff for
BS23302.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12974-RB | 302..1393 | 17..1108 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:16 Download gff for
BS23302.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12974-RB | 302..1393 | 17..1108 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:06:16 Download gff for
BS23302.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21282203..21282518 | 793..1108 | 100 | <- | Minus |
| 3L | 21282581..21282654 | 719..792 | 100 | <- | Minus |
| 3L | 21283146..21283477 | 387..718 | 100 | <- | Minus |
| 3L | 21284182..21284470 | 98..386 | 100 | <- | Minus |
| 3L | 21285055..21285135 | 17..97 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:58:57 Download gff for
BS23302.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21275303..21275618 | 793..1108 | 100 | <- | Minus |
| arm_3L | 21275681..21275754 | 719..792 | 100 | <- | Minus |
| arm_3L | 21276246..21276577 | 387..718 | 100 | <- | Minus |
| arm_3L | 21277282..21277570 | 98..386 | 100 | <- | Minus |
| arm_3L | 21278155..21278235 | 17..97 | 100 | | Minus |
BS23302.pep Sequence
Translation from 16 to 1107
> BS23302.pep
MYSAPAAKIKHFGSLKTVAAWAGILGVAQSIIWMGLTITAICAYNCVLYI
TNDLTYGSMVKTVFFDVYFKGSCKMNPSDYQNYDQTILNTVTTVFDPTQI
LIWNSVYLGVSVCWLIVSVVLLLWVRKDNPKQTVTAIYIWAFFVATICCM
DVASGVIFGVDYGRFHKEALRYNANSINAGVIYPLAATLIAGGVAAISMM
VISFKGFVLWFINFGLLAYLVARAIRISTDKDNVDTLFNPRKDSNDILTT
RTPIRAYEEVEVQAYNNAAYVPETRSMAETIQVNEGAIVRAAHLSMDSNL
MDRRFRDLNAYQQYPPPNPQQSRPLKQSSQNPMETIVVATSGFPVPDYSP
QPSPNGVLRHNQY*
BS23302.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:48:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12974-PD | 363 | CG12974-PD | 1..363 | 1..363 | 1898 | 100 | Plus |
| CG12974-PB | 363 | CG12974-PB | 1..363 | 1..363 | 1898 | 100 | Plus |
| CG12974-PC | 330 | CG12974-PC | 1..330 | 34..363 | 1728 | 100 | Plus |
| CG12974-PA | 330 | CG12974-PA | 1..330 | 34..363 | 1728 | 100 | Plus |
