BS23305.complete Sequence
3023 bp assembled on 2011-02-18
GenBank Submission: KX801135
> BS23305.complete
GAAGTTATCAGTCGACATGGCCATAGAGTCACGCTCTACGAGCACTGCAA
GTGAAACCACAAAAACCGCCATAAAATCAACCACAAGCTCAAAATCTCCA
GTAACATTCGGTAATCTCGGCGAGAAAAGACGCGCCGAACAGCTGTTCCG
CTGCGCATGCGCCAACTTCAATCTCCTGCTCCTGACTTTAATGCTCGGAT
TCGGCAAATGCTGCACTGCCACGCCCACGCCGCTGAACACGCCCTCAACG
AACACGCCCACCTCGGCAGTTAGCCCACATAATCCACAAACGCTGGACGA
GAGCGGATCGCTGAGCAAGGTGATCGATGGCAAAGCCTTCATCAACATGG
GATTCAAGTTCCTCAACGTTTCCGGAAAGATTGGCACACCCCTCGGCATA
GGCCAATCCCTGGAGGCCAAGTGCGATGAGAAGCAGTTCCAGTGCCACAG
CGGCGACTGCATACCCATTCGATTCGTTTGCGACGGCGATGCGGACTGCA
AGGATCACAGCGATGAGCAGATTAAGGAGTGCAAGTTTATAGAGGCCACT
TGCTCGTCGGACCAATTCCGTTGCGGGAATGGCAACTGCATACCGAACAA
ATGGCGCTGCGATCAGGAGAGCGATTGTGCCGATGGCTCCGATGAAGCCA
ACGAATTGTGCAACCAGACCTGTCGTGCCGACGAGTTCACCTGCGGCAAT
GGACGGTGCATCCAGAAGCGATGGAAGTGCGACCACGACGACGACTGCGG
CGATGGATCCGACGAGAAGGAGTGCCCAGTGGTGCCCTGCGACTCCGTGG
CGGAGCACACCTGCACGAATGGAGCCTGCATCGCCAAGCGGTGGGTCTGC
GACGGTGATCCGGACTGCTCCGATGGCTCAGATGAGCGGTCCTGTGCGAA
TGTGACCAAGACGACCACGCCCTGCTTATCGCACGAATACCAGTGCAAGG
ATCGCATCACCTGCCTGCATCACAGCTGGCTCTGCGATGGTGACCGCGAC
TGTCCCGATGGCGACGATGAGCACACAGCCAACTGCAAGAACGTCACCTG
CCGGGCGGACCAGTTCCAGTGCGGCGATCGCAGCTGCATTCCAGGACATC
TCACCTGCAACGGCGACAAGGACTGCGCCGATGGCAGCGACGAACGGGAT
TGCGGATTGAGTCTGAGTCTGGGGATCAACCAAGGAGGATGCAACGCAAC
CAGCGAATTCGACTGCGGTGGAGGTCAGTGCGTTCCACTCTCGAAGGTCT
GCGACAAGAGGAAGGATTGTCCGGATGGCGAGGACGAGCCGGCAGGAAAG
TGCGGGATAAACGAGTGCGCCTCGAAGAACGGAGGCTGCATGCACCAGTG
CATCGATCTGAAGGTGGGCCACCACTGCGAATGCCACGAGGGTTACAAGT
TGTCTCCGGACAAGCGGAACTGCCAGGATATCAATGAGTGCGAAGTTCCC
GGAAAGTGCTCTCAGATATGCGTGAACGAAATAGGAGGCTTCAAGTGTGA
GTGCGAAGCGGGCTACATGAGGGATCCCAAAAATCACACCAGATGCAAGG
CCAGCGAGGGACACGCCTCCCTGCTCCTGGCCAGACGCCATGACATCCGC
AAGATAGCACTCGACCACATGGAAATGACCTCCATTGTGAATAGTACAAA
GGCAGCCACTGCCCTGGACTTTGTGTTCCGCACGGGTATGATCTTCTGGA
GCGATGTGACCACCCAGAGTATATATAAAGCACCGATTGATGAGGGAAAC
GAAAAGACGGTAGTGTTGACTAAATCCTCGGTGACCTCGGATGGCCTGGC
TGTCGATTGGATCTATAACCATGTCTACTTTACGGACACCCACAAGTGCA
CCATCGAACTGACCAACTTCGAGGGCAGCATGGGTAAGGTCCTGGTAAAG
GACTCCCTGGACATTCCTCGTTCAATTGCTTTGGATCCCATTGAGGGCTG
GATGTACTGGTCCGACTGGGGCGCCTCTCCGCGCATCGAAAGGGCGGGTA
TGGATGGCTCCCACCGCACCACCATCATCAGCTATGACGTCAAGTGGCCC
AATGGTATCACCTTAGACCTGGTTAAGAAACGCATCTACTGGGTAGATGG
CAAGCTTAACGTTATCTCGTCGGCGAACTATGATGGCTCGCAAAGGAGCC
AGGTGCTCTACTCCGGCGAATACCTGCGACATCCCTTCTCGATCACCACC
TTCGAGGACAATGTCTACTGGACCGACTGGGACAAACAGGCCGTCTTCAA
GGCGAACAAGTTCACCGGGGAGGATGTGGAGCCCGTTACAGCAATGCATA
TGCTCCAGCATCCAATGGTGGTGCACGTGTACCATCCTTACCGCCAGCCG
GATGGCGTGAATCACTGCCAGTCGGTGAATGGCCACTGTTCTCATCTCTG
CCTGCCAGCTCCCAGGATCAATGAGAGGAGTCCTCGCATATCCTGCGCCT
GTCCCACCGGTCTGAAGCTGATGGTCGATGGCCTCATGTGCGTCGAGGAT
CCACTTTATTTGCCTCCAGTCACGAGACCCCCGCGAGCCCGCAAAACGAA
ACCGAGGCCAAAATCCCCGAGGAGGCGGCTGCCCACGGGTGTCCAGGTGG
GACATGCTGACATTCGGATTGAAATTAACGATGATCTCCAGCTGAGCACC
AGGCTACCCCTGTTGCCCACGACTTTCGTTGCCGACCAGCGTCCAGTGAA
AAACCATACTCAAATCGAAAAGACCACAACGCCCAGTGAGCAGCCGGATT
CCGGCTTTATTGCACTGGTGGTCATAGCCAGTCTTAGTGGATTCGCTGTC
CTGCTATCGGTGCTCCTGCTCATTGGCTACCGCTACTGCAGCAAGCGACG
CATCAACTCGATGAACTTCGAGAACCCCATCTACCGCAAGACCACCACCA
CAGAGGATCACTTCAGTTTGCGCAAAAATCTGCCGGCGCGGATCTACGAC
CACACCAGTGTCATGGATGAGGAGTACTCACCCGTCATAGGCATATCCTC
GTATTAGAAGCTTTCTAGACCAT
BS23305.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:09:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LpR1-RJ | 2991 | CG31094-PJ | 1..2991 | 17..3007 | 14940 | 100 | Plus |
| LpR1-RS | 2664 | CG31094-PS | 316..2664 | 659..3007 | 11730 | 100 | Plus |
| LpR1-RK | 3231 | CG31094-PK | 883..3231 | 659..3007 | 11730 | 100 | Plus |
| LpR1-RS | 2664 | CG31094-PS | 82..202 | 542..662 | 605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:09:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LpR1-RJ | 3852 | CG31094-RJ | 229..3221 | 16..3008 | 14950 | 100 | Plus |
| LpR1-RS | 3540 | CG31094-RS | 560..2909 | 659..3008 | 11735 | 100 | Plus |
| LpR1-RK | 4092 | CG31094-RK | 1112..3461 | 659..3008 | 11735 | 100 | Plus |
| LpR1-RS | 3540 | CG31094-RS | 326..446 | 542..662 | 605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:09:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25744980..25746393 | 2302..889 | 7070 | 100 | Minus |
| 3R | 32079331 | 3R | 25706816..25707928 | 2302..1190 | 3015 | 84.7 | Minus |
| 3R | 32079331 | 3R | 25758791..25759177 | 402..16 | 1935 | 100 | Minus |
| 3R | 32079331 | 3R | 25747007..25747233 | 889..663 | 1120 | 99.6 | Minus |
| 3R | 32079331 | 3R | 25744684..25744883 | 2501..2302 | 1000 | 100 | Minus |
| 3R | 32079331 | 3R | 25744366..25744542 | 2678..2502 | 885 | 100 | Minus |
| 3R | 32079331 | 3R | 25742154..25742316 | 2974..2812 | 815 | 100 | Minus |
| 3R | 32079331 | 3R | 25754345..25754487 | 542..400 | 715 | 100 | Minus |
| 3R | 32079331 | 3R | 25706287..25706479 | 2501..2309 | 680 | 90.2 | Minus |
| 3R | 32079331 | 3R | 25742392..25742526 | 2812..2678 | 675 | 100 | Minus |
| 3R | 32079331 | 3R | 25749270..25749391 | 662..541 | 610 | 100 | Minus |
| 3R | 32079331 | 3R | 25709411..25709513 | 769..667 | 260 | 83.5 | Minus |
| 3R | 32079331 | 3R | 25722419..25722536 | 539..422 | 245 | 80.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:09:23 has no hits.
BS23305.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:00 Download gff for
BS23305.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LpR1-RJ | 230..3220 | 17..3007 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:15:58 Download gff for
BS23305.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LpR1-RJ | 230..3220 | 17..3007 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:14:26 Download gff for
BS23305.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LpR1-RJ | 230..3220 | 17..3007 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:14:26 Download gff for
BS23305.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25741980..25742012 | 2975..3007 | 100 | <- | Minus |
| 3R | 25742154..25742315 | 2813..2974 | 100 | <- | Minus |
| 3R | 25742392..25742525 | 2679..2812 | 100 | <- | Minus |
| 3R | 25744366..25744542 | 2502..2678 | 100 | <- | Minus |
| 3R | 25744684..25744882 | 2303..2501 | 100 | <- | Minus |
| 3R | 25744980..25746392 | 890..2302 | 100 | <- | Minus |
| 3R | 25747007..25747233 | 663..889 | 99 | <- | Minus |
| 3R | 25749270..25749389 | 543..662 | 100 | <- | Minus |
| 3R | 25754345..25754485 | 402..542 | 100 | <- | Minus |
| 3R | 25758792..25759176 | 17..401 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:15:58 Download gff for
BS23305.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21567702..21567734 | 2975..3007 | 100 | <- | Minus |
| arm_3R | 21567876..21568037 | 2813..2974 | 100 | <- | Minus |
| arm_3R | 21568114..21568247 | 2679..2812 | 100 | <- | Minus |
| arm_3R | 21570088..21570264 | 2502..2678 | 100 | <- | Minus |
| arm_3R | 21570406..21570604 | 2303..2501 | 100 | <- | Minus |
| arm_3R | 21570702..21572114 | 890..2302 | 100 | <- | Minus |
| arm_3R | 21572729..21572955 | 663..889 | 99 | <- | Minus |
| arm_3R | 21574992..21575111 | 543..662 | 100 | <- | Minus |
| arm_3R | 21580067..21580207 | 402..542 | 100 | <- | Minus |
| arm_3R | 21584514..21584898 | 17..401 | 100 | | Minus |
BS23305.pep Sequence
Translation from 16 to 3006
> BS23305.pep
MAIESRSTSTASETTKTAIKSTTSSKSPVTFGNLGEKRRAEQLFRCACAN
FNLLLLTLMLGFGKCCTATPTPLNTPSTNTPTSAVSPHNPQTLDESGSLS
KVIDGKAFINMGFKFLNVSGKIGTPLGIGQSLEAKCDEKQFQCHSGDCIP
IRFVCDGDADCKDHSDEQIKECKFIEATCSSDQFRCGNGNCIPNKWRCDQ
ESDCADGSDEANELCNQTCRADEFTCGNGRCIQKRWKCDHDDDCGDGSDE
KECPVVPCDSVAEHTCTNGACIAKRWVCDGDPDCSDGSDERSCANVTKTT
TPCLSHEYQCKDRITCLHHSWLCDGDRDCPDGDDEHTANCKNVTCRADQF
QCGDRSCIPGHLTCNGDKDCADGSDERDCGLSLSLGINQGGCNATSEFDC
GGGQCVPLSKVCDKRKDCPDGEDEPAGKCGINECASKNGGCMHQCIDLKV
GHHCECHEGYKLSPDKRNCQDINECEVPGKCSQICVNEIGGFKCECEAGY
MRDPKNHTRCKASEGHASLLLARRHDIRKIALDHMEMTSIVNSTKAATAL
DFVFRTGMIFWSDVTTQSIYKAPIDEGNEKTVVLTKSSVTSDGLAVDWIY
NHVYFTDTHKCTIELTNFEGSMGKVLVKDSLDIPRSIALDPIEGWMYWSD
WGASPRIERAGMDGSHRTTIISYDVKWPNGITLDLVKKRIYWVDGKLNVI
SSANYDGSQRSQVLYSGEYLRHPFSITTFEDNVYWTDWDKQAVFKANKFT
GEDVEPVTAMHMLQHPMVVHVYHPYRQPDGVNHCQSVNGHCSHLCLPAPR
INERSPRISCACPTGLKLMVDGLMCVEDPLYLPPVTRPPRARKTKPRPKS
PRRRLPTGVQVGHADIRIEINDDLQLSTRLPLLPTTFVADQRPVKNHTQI
EKTTTPSEQPDSGFIALVVIASLSGFAVLLSVLLLIGYRYCSKRRINSMN
FENPIYRKTTTTEDHFSLRKNLPARIYDHTSVMDEEYSPVIGISSY*
BS23305.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:27:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LpR1-PJ | 996 | CG31094-PJ | 1..996 | 1..996 | 5500 | 100 | Plus |
| LpR1-PH | 1037 | CG31094-PH | 1..1037 | 1..996 | 5448 | 96 | Plus |
| LpR1-PK | 1076 | CG31094-PK | 1..1076 | 1..996 | 5143 | 88.7 | Plus |
| LpR1-PQ | 976 | CG31094-PQ | 1..976 | 1..996 | 4912 | 88.5 | Plus |
| LpR1-PP | 976 | CG31094-PP | 1..976 | 1..996 | 4912 | 88.5 | Plus |
