Clone BS23306 Report

Search the DGRC for BS23306

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:233
Well:6
Vector:pDNR-Dual
Associated Gene/Transcriptgfzf-RD
Protein status:BS23306.pep: full length peptide match
Sequenced Size:757

Clone Sequence Records

BS23306.complete Sequence

757 bp assembled on 2011-01-25

GenBank Submission: KX806270

> BS23306.complete
GAAGTTATCAGTCGACATGAAACTCTACGCCGTATCCGATGGTCCGCCTT
CCCTGGCCGTTCGCATGACCCTGAAGGCCTTGGATATACAATATCAACTC
ATCAATGTGGACTTTTGCGCCATGGAACATCGCTCTGAGGAGTACTCGAA
GATGAATCCGCAAAAGGAGATACCCGTGCTGGACGACGACGGTTTCTATC
TATCGGAGAGCATTGCCATTATGCAATACCTCTGCGACAAGTACGCGCCG
GATTCAACGCTATATCCGCAGGACGTCAATGTGAGAGCAGTAATCAATCA
GCGGCTATGCTTTAACATGGGATTCTACTATGCCCCCATATCCGCCCACA
GCATGGCGCCCATTTTCTTCGACTACAAACGTACGCCCATGTCGCTAAAG
AAGGTGCAGAACGCACTTGATGTGTTCGAAACCTATTTGCAGCGACTGGG
CACTAAGTACGCGGCAGGCGAGAACATAACCATTGCAGACTTCGCTCTCA
TTTCGGCCACGATCTGCTTGGAGGCAATTAACTTTGACTTGCACCAGTTT
ACGTTGGTGAACAAGTGGTACGAAACCTTCAAGGTGGAATACCCGCAGCT
GTGGGAGATCGCCAACAGCGGCATGCAGGAGATAAGTGCGTTTGAGCAGA
ACCCACCGGATATGTCACACATGGAACACCCATTCCATCCGACGCGCAAG
TCTATGGGCCTGAAGTTGTAGAAGCTTTCTAGACCATTCGTTTGGCGCGC
GAAAGGG

BS23306.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
gfzf-RE 3138 CG33546-PE 2434..3138 17..721 3525 100 Plus
gfzf-RD 705 CG33546-PD 1..705 17..721 3525 100 Plus
gfzf-RB 3138 CG33546-PB 2434..3138 17..721 3525 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:30:36
Subject Length Description Subject Range Query Range Score Percent Strand
gfzf-RE 3608 CG33546-RE 2772..3477 17..722 3530 100 Plus
gfzf-RD 1200 CG33546-RD 62..767 17..722 3530 100 Plus
gfzf-RB 3910 CG33546-RB 2772..3477 17..722 3530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:30:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7146313..7146885 722..150 2865 100 Minus
3R 32079331 3R 7146945..7147079 151..17 675 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:30:34 has no hits.

BS23306.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:39 Download gff for BS23306.complete
Subject Subject Range Query Range Percent Splice Strand
gfzf-RD 59..766 17..727 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:58:36 Download gff for BS23306.complete
Subject Subject Range Query Range Percent Splice Strand
gfzf-RB 2772..3479 17..727 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:59 Download gff for BS23306.complete
Subject Subject Range Query Range Percent Splice Strand
gfzf-RB 2772..3479 17..727 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:59 Download gff for BS23306.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7146311..7146883 152..727 99 <- Minus
3R 7146945..7147079 17..151 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:58:36 Download gff for BS23306.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2972033..2972605 152..727 99 <- Minus
arm_3R 2972667..2972801 17..151 100   Minus

BS23306.pep Sequence

Translation from 16 to 720

> BS23306.pep
MKLYAVSDGPPSLAVRMTLKALDIQYQLINVDFCAMEHRSEEYSKMNPQK
EIPVLDDDGFYLSESIAIMQYLCDKYAPDSTLYPQDVNVRAVINQRLCFN
MGFYYAPISAHSMAPIFFDYKRTPMSLKKVQNALDVFETYLQRLGTKYAA
GENITIADFALISATICLEAINFDLHQFTLVNKWYETFKVEYPQLWEIAN
SGMQEISAFEQNPPDMSHMEHPFHPTRKSMGLKL*

BS23306.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:48:20
Subject Length Description Subject Range Query Range Score Percent Strand
gfzf-PD 234 CG33546-PD 1..234 1..234 1236 100 Plus
gfzf-PE 1045 CG33546-PE 812..1045 1..234 1236 100 Plus
gfzf-PB 1045 CG33546-PB 812..1045 1..234 1236 100 Plus
GstD1-PB 209 CG10045-PB 5..207 4..209 329 36.4 Plus
GstD1-PA 209 CG10045-PA 5..207 4..209 329 36.4 Plus